Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   UMNF18_RS07225 Genome accession   NZ_AGTD01000001
Coordinates   4013222..4013899 (+) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli UMNF18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4008222..4018899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMNF18_RS07260 (UMNF18_4237) gspG 4008702..4009139 (+) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -
  UMNF18_RS07255 (UMNF18_4238) gspH 4009147..4009656 (+) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  UMNF18_RS07250 (UMNF18_4239) gspI 4009653..4010030 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  UMNF18_RS07245 (UMNF18_4240) gspJ 4010023..4010610 (+) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  UMNF18_RS07240 (UMNF18_4241) gspK 4010603..4011586 (+) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  UMNF18_RS07235 (UMNF18_4242) gspL 4011601..4012764 (+) 1164 WP_001115238.1 type II secretion system protein GspL -
  UMNF18_RS07230 (UMNF18_4243) gspM 4012761..4013222 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  UMNF18_RS07225 (UMNF18_4244) pilD 4013222..4013899 (+) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  UMNF18_RS07220 (UMNF18_4245) bfr 4013928..4014404 (-) 477 WP_000675504.1 bacterioferritin -
  UMNF18_RS07215 (UMNF18_4246) bfd 4014476..4014670 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  UMNF18_RS07210 (UMNF18_4248) chiA 4014839..4017532 (-) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=54231 UMNF18_RS07225 WP_000178161.1 4013222..4013899(+) (pilD) [Escherichia coli UMNF18]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=54231 UMNF18_RS07225 WP_000178161.1 4013222..4013899(+) (pilD) [Escherichia coli UMNF18]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378

Multiple sequence alignment