Detailed information NTG0542289

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LNN47_RS21960
• Genome accession: NZ_CP086470
• Coordinates: 4586105..4587130 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain Ec-050-T20-ESBL
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4581105..4592130

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LNN47_RS21940 (LNN47_21945)	metJ	4582166..4582483 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
LNN47_RS21945 (LNN47_21950)	yiiX	4582667..4583275 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
LNN47_RS21950 (LNN47_21955)	rpmE	4583336..4583548 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
LNN47_RS21955 (LNN47_21960)	priA	4583751..4585949 (+)	2199	WP_001333520.1	primosomal protein N'	Machinery gene
LNN47_RS21960 (LNN47_21965)	cytR	4586105..4587130 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
LNN47_RS21965 (LNN47_21970)	ftsN	4587222..4588181 (+)	960	WP_000068828.1	cell division protein FtsN	-
LNN47_RS21970 (LNN47_21975)	hslV	4588274..4588804 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
LNN47_RS21975 (LNN47_21980)	hslU	4588814..4590145 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
LNN47_RS21980 (LNN47_21985)	menA	4590212..4591138 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LNN47_RS21985 (LNN47_21990)	rraA	4591231..4591716 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
LNN47_RS21990 (LNN47_21995)	zapB	4591801..4592046 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=542289 LNN47_RS21960 WP_000644904.1 4586105..4587130(+) (cytR) [Escherichia coli strain Ec-050-T20-ESBL]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=542289 LNN47_RS21960 WP_000644904.1 4586105..4587130(+) (cytR) [Escherichia coli strain Ec-050-T20-ESBL]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628