Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   LM401_RS23395 Genome accession   NZ_CP086391
Coordinates   4396781..4397773 (-) Length   330 a.a.
NCBI ID   WP_000224455.1    Uniprot ID   -
Organism   Escherichia coli strain 1585m1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4391781..4402773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM401_RS23385 (LM401_23395) yieP 4394673..4395365 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  LM401_RS23390 (LM401_23400) mdtD 4395388..4396815 (+) 1428 WP_001280864.1 multidrug transporter subunit MdtD -
  LM401_RS23395 (LM401_23405) cytR 4396781..4397773 (-) 993 WP_000224455.1 ribose operon transcriptional repressor RbsR Regulator
  LM401_RS23400 (LM401_23410) rbsK 4397777..4398706 (-) 930 WP_001300603.1 ribokinase -
  LM401_RS23405 (LM401_23415) rbsB 4398832..4399722 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  LM401_RS23410 (LM401_23420) rbsC 4399747..4400712 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  LM401_RS23415 (LM401_23425) rbsA 4400717..4402222 (-) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  LM401_RS23420 (LM401_23430) rbsD 4402230..4402649 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36570.85 Da        Isoelectric Point: 5.2141

>NTDB_id=542209 LM401_RS23395 WP_000224455.1 4396781..4397773(-) (cytR) [Escherichia coli strain 1585m1]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAISAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=542209 LM401_RS23395 WP_000224455.1 4396781..4397773(-) (cytR) [Escherichia coli strain 1585m1]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTTCCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364