Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JYG36_RS23790 Genome accession   NZ_CP071007
Coordinates   5176440..5177807 (-) Length   455 a.a.
NCBI ID   WP_045195900.1    Uniprot ID   A0A1H1GBB5
Organism   Pseudomonas sp. SORT22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5171440..5182807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG36_RS23775 (JYG36_23775) - 5174230..5174688 (-) 459 WP_213602484.1 hypothetical protein -
  JYG36_RS23780 (JYG36_23780) - 5174764..5175762 (-) 999 WP_249744379.1 FecR family protein -
  JYG36_RS23785 (JYG36_23785) - 5175831..5176334 (-) 504 WP_045195901.1 RNA polymerase sigma factor -
  JYG36_RS23790 (JYG36_23790) radA 5176440..5177807 (-) 1368 WP_045195900.1 DNA repair protein RadA Machinery gene
  JYG36_RS23795 (JYG36_23795) mscL 5177983..5178396 (+) 414 WP_213602487.1 large-conductance mechanosensitive channel protein MscL -
  JYG36_RS23800 (JYG36_23800) - 5178445..5179221 (-) 777 WP_195885645.1 ferredoxin--NADP reductase -
  JYG36_RS23805 (JYG36_23805) - 5179566..5180270 (+) 705 WP_213602489.1 autoinducer binding domain-containing protein -
  JYG36_RS23810 (JYG36_23810) - 5180365..5181489 (+) 1125 WP_213602491.1 methyltransferase -
  JYG36_RS23815 (JYG36_23815) - 5181611..5181766 (-) 156 WP_045195893.1 DUF2474 domain-containing protein -
  JYG36_RS23820 (JYG36_23820) cydB 5181779..5182786 (-) 1008 WP_045195891.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48729.27 Da        Isoelectric Point: 7.0801

>NTDB_id=542180 JYG36_RS23790 WP_045195900.1 5176440..5177807(-) (radA) [Pseudomonas sp. SORT22]
MAKAKRMYGCTECGATFPKWAGQCAECGAWNTLVETVLESGAAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFTTASAEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDKLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLS
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAIMSSLRNRPLDNGLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=542180 JYG36_RS23790 WP_045195900.1 5176440..5177807(-) (radA) [Pseudomonas sp. SORT22]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCGAAATGGGCCGGGCAATGCGCTGAATG
CGGTGCCTGGAACACCCTGGTCGAGACCGTGCTCGAGAGTGGCGCGGCCGCCGCACCGAGCGGGCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAGGAAATCCCGCGCTTCACTACCGCCAGTGCCGAACTC
GACCGGGTACTCGGCGGCGGCCTGGTCGACGGTTCGGTGGTGCTGATCGGTGGTGATCCGGGCATCGGCAAGTCGACCAT
CCTCCTGCAGACCCTGTGCAACATCGCTACGCGCATGCCGGCGCTGTACGTCACCGGCGAAGAGTCCCAGCAGCAGGTGG
CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGACAAGCTGCGGGTGATGACCGAAACCTGTATCGAGACCATCATCGCC
ACCGCCCGGCTGGAGAAGCCCAAGGTGATGGTCATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAGTCGGCGCC
TGGCGGTGTTTCCCAGGTGCGCGAAAGCGCAGCCTTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATCTTCCTCG
TCGGTCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCACGGGTGCTCGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGCGAATCCGACGGCCGCTTGCGTTTGCTGCGCGCGGTGAAAAACCGTTTTGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACCGTGGCCTGAAGGAAGTCTCCAACCCCTCGGCGATCTTTCTTACGCGTGCCCAGGAAGAAGTACCGGGCA
GCGTGGTCATGGCCACCTGGGAAGGTACCCGGCCGATGCTGGTGGAGGTTCAGGCCCTGGTCGACGACAGCCACCTGTCC
AACCCGCGGCGGGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCATCGCCATGGCGGCAT
CCCTACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACGGCCTCCGACCTGGCGCTGA
TGGCGGCGATCATGTCCAGCCTGCGCAACCGCCCGCTGGACAACGGCCTGCTGGTGTTTGGCGAGGTTGGCTTGTCTGGC
GAAGTGCGCCCGGTGCCGAGCGGCCAGGAGCGTTTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCCCCGAAGGAAGCGCCGCCCGGGCTGCAGGTGATTGCCGTGACCCGCCTTGAACAGGCGCTGGACGCGCTGT
TCGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(75-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1GBB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.623

100

0.47
  radA Streptococcus pneumoniae R6

46.623

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.623

100

0.47
  radA Streptococcus pneumoniae D39

46.623

100

0.47
  radA Streptococcus mitis SK321

46.813

100

0.468
  radA Streptococcus mitis NCTC 12261

46.593

100

0.466