Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LM401_RS09125 Genome accession   NZ_CP086391
Coordinates   1451489..1452916 (-) Length   475 a.a.
NCBI ID   WP_001374015.1    Uniprot ID   -
Organism   Escherichia coli strain 1585m1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1446489..1457916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM401_RS09090 (LM401_09095) hisL 1447073..1447123 (-) 51 WP_001364200.1 his operon leader peptide -
  LM401_RS09095 (LM401_09100) yefM 1447406..1447657 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  LM401_RS09100 (LM401_09105) yoeB 1447654..1447908 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  LM401_RS09105 (LM401_09110) yeeZ 1447991..1448815 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  LM401_RS09110 (LM401_09115) yeeY 1448861..1449790 (+) 930 WP_001374016.1 LysR substrate-binding domain-containing protein -
  LM401_RS09115 (LM401_09120) yoeI 1450005..1450067 (+) 63 WP_010723108.1 membrane protein YoeI -
  LM401_RS09120 (LM401_09125) plaP 1450057..1451415 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LM401_RS09125 (LM401_09130) sbcB 1451489..1452916 (-) 1428 WP_001374015.1 exodeoxyribonuclease I Machinery gene
  LM401_RS09130 (LM401_09135) dacD 1453125..1454291 (+) 1167 WP_001374019.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LM401_RS09135 (LM401_09140) sbmC 1454410..1454883 (+) 474 WP_001374018.1 DNA gyrase inhibitor SbmC -
  LM401_RS09140 (LM401_09145) yeeA 1455081..1456139 (+) 1059 WP_001200890.1 FUSC family protein -
  LM401_RS09145 (LM401_09150) tmaR 1456311..1456640 (+) 330 WP_001374017.1 DUF496 family protein -
  LM401_RS09150 (LM401_09155) - 1456741..1456925 (-) 185 Protein_1365 EutP/PduV family microcompartment system protein -
  LM401_RS09155 (LM401_09160) - 1456985..1457122 (+) 138 Protein_1366 transposase domain-containing protein -
  LM401_RS09160 (LM401_09165) - 1457411..1457503 (-) 93 Protein_1367 DUF957 domain-containing protein -
  LM401_RS09165 (LM401_09170) yeeW 1457537..1457731 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54496.83 Da        Isoelectric Point: 5.6070

>NTDB_id=542165 LM401_RS09125 WP_001374015.1 1451489..1452916(-) (sbcB) [Escherichia coli strain 1585m1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELNSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQVYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=542165 LM401_RS09125 WP_001374015.1 1451489..1452916(-) (sbcB) [Escherichia coli strain 1585m1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGAATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGTCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579