Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   JYB86_RS11185 Genome accession   NZ_CP070997
Coordinates   2377748..2382244 (-) Length   1498 a.a.
NCBI ID   WP_205779015.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2372748..2387244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS11155 (JYB86_11155) elsL 2373804..2374334 (-) 531 WP_005179524.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  JYB86_RS11160 (JYB86_11160) - 2374331..2374720 (-) 390 WP_104511396.1 YbaN family protein -
  JYB86_RS11165 (JYB86_11165) - 2374811..2375713 (+) 903 WP_205779014.1 DUF1853 family protein -
  JYB86_RS11170 (JYB86_11170) - 2375814..2375960 (+) 147 WP_005179532.1 entericidin A/B family lipoprotein -
  JYB86_RS11175 (JYB86_11175) dapE 2376087..2377220 (+) 1134 WP_205779788.1 succinyl-diaminopimelate desuccinylase -
  JYB86_RS11180 (JYB86_11180) - 2377290..2377751 (-) 462 WP_005179535.1 hypothetical protein -
  JYB86_RS11185 (JYB86_11185) chpA 2377748..2382244 (-) 4497 WP_205779015.1 Hpt domain-containing protein Regulator
  JYB86_RS11190 (JYB86_11190) - 2382401..2384473 (-) 2073 WP_087662228.1 methyl-accepting chemotaxis protein -
  JYB86_RS11195 (JYB86_11195) - 2384519..2385055 (-) 537 WP_005179538.1 chemotaxis protein CheW -
  JYB86_RS11200 (JYB86_11200) - 2385059..2385427 (-) 369 WP_005179539.1 PleD family two-component system response regulator -
  JYB86_RS11205 (JYB86_11205) pilG 2385444..2385827 (-) 384 WP_005179541.1 twitching motility response regulator PilG Regulator
  JYB86_RS11210 (JYB86_11210) - 2386157..2386750 (+) 594 WP_410169750.1 hypothetical protein -

Sequence


Protein


Download         Length: 1498 a.a.        Molecular weight: 166904.35 Da        Isoelectric Point: 4.2897

>NTDB_id=542092 JYB86_RS11185 WP_205779015.1 2377748..2382244(-) (chpA) [Acinetobacter indicus strain LYS68A]
MKEILKNLVETTALPEDSYLDQDAEILEIFVEEIEEIFVELKDLLAQWATQPNDQETLTTIRRHFHTLKGSGRMVGAKSA
GELAWTVEDTLNRVISGSLTLSAQVQQFATAVANVFEYKLYPSFKHAQPMALDLRPLVLLGQQLQQNLSPEPALEELLQL
ASSLTSSDSITGLEFDTASTDEQVAVDTELAVADSIEEDPLAAETLAIFIEEAEEHLLTVDRFLAHDELKTQDYNGLIRA
LHTLRGSSSMAHIEQIFDASSKVENLFKTLLQDEIESTSKETALLLQYAEFVRDYLHLLPQNDSAGMDRIYQTFNTAWQN
YGFSLEDVDESVNPQGLVSKLIELNIDQLLDAEFEFDQRAQAEYPEYIQTLSHQAKLLVERTDNRASQGIHDFTQELQLA
YAALLDKPSLLHSDYAFELFGQAHQEFIHLFDTLAAGQRVSLSEDAQQIINNLSAFVQQDVEALSPETDTTEAVTETAEV
GAGLNLAVLSQRLEADRQYMDSAEANKDFDPDLLDIFLEEAEELLAGIDQDVNSWSQDPSNTAALNNLMRHLHTLKGGAN
MITASHIGLIAHHLETIYERIINRQMNASTALIQIIRLVQDNIADRIQTIREQQVDYPAQESLAILENISELAQGQLVEA
ESLAVAAEATSSADVQQSDAAALEFELEQPAPAETAYAAPEDEQQPDTSSEPVLEDAPTLAEQTIPTDAVSTTENDGEDN
LHSIVEETFLEEAEELLDTTESLLKQWFDHRSDRSILLQLQRAAHSLKGGARMAEIEPVAVIAYQLENTFEQFAVHQFNS
NAYDALLNTTVAWLKEAIFQRDYSNFDSLKASLESIEYVNATAQLPERFNATDLLAPSKTFEFVQGDGAEPPSMQGEWSE
TAQLDNSNEMIRISADLVEKMIDLSGENAINRSRIEMELGQLGGTLNEMELAIKRLADQLRRMEGELESQIIAKHGDEHS
RYTDFDPLEMDQYSSLNQLSKSLAESASDLVDFKTTLADKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQRI
VRQTSSTLNRPAELVVHNTEGELDRTILERLISPFEHMLRNAVDHGLEDAAVRKQAAKPEVGQIALNIGRQGTDVLISFT
DDGKGIDETKIHAKALSLGLIQPEQQLDKKEILQLIFHPGFSTAQAVTQISGRGVGLDVVQSEIKALGGHVEVDSELGKG
TTFSIRVPTTVAVSDALMVKVGDQQFAIPLAQIDRIVRISPSALESYFSSKDDYFKIDQQNYKLRYLSEFVANQPLPRLS
NIAHSLPVLLIKGNTGQTIALLVDQLIGSRGQIVMKPIGQQFSSLGSIAGATILGDGQVCLILDGQNIARQIQATQRIKH
VMEPREVQRRDTRHLVMIVDDSVTVRKVTSRLLERQGFDVVTAKDGVDAIEQLENVKPDLMLLDIEMPRMDGFEVTTLVR
RHDIHRDLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIENILHSSEAKA

Nucleotide


Download         Length: 4497 bp        

>NTDB_id=542092 JYB86_RS11185 WP_205779015.1 2377748..2382244(-) (chpA) [Acinetobacter indicus strain LYS68A]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACTGCGCTTCCTGAAGATAGTTATCTTGATCAAGATGCAGAAATTCT
AGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGAGCTAAAAGACCTGTTGGCTCAATGGGCCACGCAGCCTAACG
ATCAGGAAACGCTAACCACCATTCGCCGTCATTTTCATACCTTAAAAGGTTCGGGACGTATGGTTGGGGCCAAGTCGGCA
GGGGAGCTGGCCTGGACGGTTGAAGATACCTTAAACCGGGTCATTTCCGGTAGCCTGACCCTGTCAGCGCAGGTGCAGCA
GTTTGCAACCGCGGTGGCGAACGTCTTTGAATACAAACTTTATCCAAGCTTTAAACATGCCCAGCCGATGGCACTGGACC
TGCGTCCATTGGTGCTATTAGGACAACAACTACAACAAAATTTAAGTCCTGAACCGGCCTTAGAAGAACTTCTACAACTG
GCGAGCAGCCTAACATCCAGCGACAGTATTACTGGTCTGGAGTTTGATACAGCAAGCACTGATGAGCAGGTTGCTGTAGA
CACCGAGCTGGCTGTGGCTGATAGTATTGAAGAAGATCCGTTAGCGGCTGAAACACTGGCCATCTTTATTGAAGAAGCGG
AAGAACACCTGTTAACAGTGGATCGCTTCCTGGCACATGATGAGCTGAAAACTCAAGATTACAATGGCCTGATTCGTGCC
CTGCATACCTTGCGCGGCAGTTCATCCATGGCACACATCGAGCAGATTTTTGATGCCAGCTCCAAGGTCGAAAACCTGTT
CAAGACCCTGTTACAGGATGAAATTGAATCGACTTCCAAAGAAACCGCACTGTTATTGCAATATGCTGAATTTGTGCGGG
ATTATCTGCATCTGTTGCCGCAGAATGACAGTGCCGGCATGGACCGGATTTATCAGACTTTCAATACTGCATGGCAGAAC
TATGGCTTTAGCCTGGAAGATGTTGATGAATCAGTGAATCCGCAAGGTCTGGTATCCAAGCTGATTGAACTGAATATTGA
TCAGTTGCTCGATGCTGAGTTCGAATTTGACCAGCGTGCGCAGGCTGAATATCCGGAATATATCCAGACCCTGAGCCATC
AGGCGAAGCTGCTGGTAGAGCGTACCGATAACCGCGCCTCTCAGGGTATTCATGATTTTACCCAGGAATTACAACTGGCC
TATGCGGCCTTGCTGGACAAGCCAAGCCTGCTGCATAGCGATTATGCCTTTGAATTATTTGGACAGGCGCATCAGGAATT
TATCCATCTGTTTGATACCCTGGCTGCCGGGCAACGCGTCAGCTTAAGCGAAGATGCTCAGCAGATCATCAATAACCTGA
GTGCCTTTGTACAGCAGGATGTTGAAGCACTAAGCCCAGAAACTGATACCACAGAAGCTGTCACCGAAACGGCTGAAGTC
GGTGCAGGGCTGAATCTGGCCGTATTGTCACAGCGTCTGGAAGCTGACCGTCAATACATGGACAGCGCTGAGGCCAACAA
GGACTTTGATCCAGACTTGCTGGACATTTTCCTGGAAGAAGCCGAAGAGTTACTCGCGGGTATTGACCAGGATGTTAATA
GCTGGAGCCAAGACCCGAGCAATACTGCTGCACTGAACAATCTGATGCGCCATTTGCACACCTTAAAAGGTGGCGCCAAC
ATGATTACAGCCAGCCATATCGGTCTGATTGCGCACCATTTAGAAACCATTTATGAGCGCATCATTAACCGTCAAATGAA
TGCATCAACCGCATTGATTCAGATTATCCGTCTGGTTCAGGACAATATTGCGGACCGTATCCAGACCATCCGTGAACAGC
AGGTCGATTATCCGGCGCAAGAATCACTGGCGATTCTGGAAAATATTAGCGAACTAGCCCAAGGTCAACTGGTTGAAGCT
GAATCGCTGGCAGTGGCGGCTGAAGCAACCTCTAGCGCAGATGTACAACAGTCTGATGCAGCTGCACTTGAATTTGAGTT
GGAACAGCCAGCACCTGCAGAAACAGCCTATGCTGCGCCTGAAGATGAGCAGCAGCCAGATACTAGCAGCGAACCGGTAC
TGGAAGATGCACCGACTCTGGCCGAGCAAACCATCCCTACAGATGCGGTATCTACTACTGAAAATGACGGTGAAGACAAT
CTGCATTCGATTGTGGAAGAAACCTTCCTGGAAGAGGCTGAAGAGCTGCTCGACACCACGGAAAGCCTGTTAAAGCAGTG
GTTTGACCATCGTAGTGACCGGAGCATTTTGCTGCAGTTACAACGTGCGGCGCACAGCCTGAAAGGCGGCGCGCGTATGG
CTGAAATCGAGCCGGTGGCCGTGATTGCTTATCAGCTGGAAAATACCTTTGAACAGTTTGCGGTGCATCAGTTTAATTCC
AATGCTTATGATGCCTTGCTCAACACCACTGTGGCCTGGTTAAAAGAAGCCATCTTCCAGCGCGATTACAGTAACTTTGA
CAGCCTGAAAGCCAGCCTGGAGTCGATTGAATACGTCAATGCGACGGCACAGCTGCCAGAACGCTTTAATGCTACCGATT
TGCTGGCGCCAAGCAAAACCTTCGAATTTGTGCAGGGTGATGGTGCCGAGCCGCCATCCATGCAGGGCGAATGGAGCGAA
ACCGCACAGCTGGATAACAGCAATGAGATGATCCGTATTTCGGCTGATCTGGTTGAGAAGATGATTGACCTGTCGGGTGA
AAACGCGATTAACCGCTCGCGAATCGAGATGGAGCTGGGTCAGCTGGGCGGTACCCTGAATGAAATGGAACTCGCGATTA
AACGTCTGGCCGATCAGTTACGCCGAATGGAAGGCGAGCTGGAAAGCCAGATTATTGCCAAACATGGTGATGAACATTCA
CGCTATACCGACTTCGACCCGCTGGAGATGGATCAGTATTCATCCTTGAACCAGCTGTCGAAATCGTTGGCAGAATCGGC
GTCGGACTTGGTGGACTTTAAGACCACGCTGGCGGACAAGATTCGTGATGCTGAAGGTCTGTTACTGCAACAGTCGCGGA
TTCAGGCAGAAATTCAGGAAAGCCTGATGCGCACCCGTCTGGTACCGTTCTCGCGCATGTTGCCACGTTTACAGCGGATT
GTGCGTCAGACTTCATCGACCTTAAACCGTCCTGCCGAGCTGGTGGTGCACAATACCGAAGGCGAGCTGGACCGGACTAT
TCTGGAACGCCTGATTTCACCATTTGAACACATGCTGCGTAATGCGGTGGACCATGGTCTGGAAGATGCCGCTGTACGTA
AACAGGCTGCGAAGCCGGAAGTGGGCCAGATTGCGCTGAACATTGGCCGTCAGGGTACCGATGTACTGATTAGCTTTACC
GATGATGGTAAAGGGATTGATGAAACCAAGATTCACGCCAAAGCCCTGAGCCTTGGCCTGATTCAGCCAGAGCAGCAGCT
GGACAAGAAAGAAATTCTGCAGCTGATTTTCCATCCGGGCTTTAGTACCGCACAAGCCGTGACCCAAATTTCGGGTCGTG
GCGTCGGGCTGGATGTGGTGCAAAGCGAAATTAAAGCACTGGGCGGCCATGTCGAGGTCGATTCTGAACTTGGTAAGGGC
ACCACCTTCAGTATTCGTGTACCGACCACAGTGGCGGTATCCGATGCCCTGATGGTAAAAGTCGGCGATCAGCAGTTTGC
AATTCCACTGGCGCAAATTGACCGTATTGTACGAATTTCACCTTCTGCGCTGGAAAGTTACTTCAGCAGCAAAGATGACT
ACTTCAAGATTGATCAGCAGAACTATAAGTTGCGCTATCTGTCCGAGTTTGTCGCCAATCAGCCATTGCCGCGTTTAAGC
AATATCGCGCATTCATTGCCGGTGCTGCTGATTAAAGGCAATACCGGTCAGACCATTGCCTTACTGGTCGATCAGCTGAT
TGGTTCGCGTGGCCAGATTGTGATGAAACCGATTGGCCAGCAGTTCTCCAGCCTGGGCTCGATTGCCGGCGCGACCATTC
TTGGTGATGGTCAGGTCTGTCTGATTCTGGATGGTCAGAATATTGCCCGTCAGATTCAGGCAACCCAGCGCATCAAGCAT
GTGATGGAGCCGCGTGAAGTACAGCGTCGTGATACCCGTCATCTGGTAATGATTGTGGATGACTCGGTGACCGTACGTAA
GGTCACGTCACGTCTGCTCGAGCGTCAGGGCTTTGATGTGGTCACAGCCAAAGACGGTGTCGATGCGATTGAGCAGCTTG
AAAATGTTAAACCGGATCTGATGCTGCTGGATATTGAAATGCCGCGTATGGACGGCTTTGAGGTGACCACCCTGGTACGC
CGCCATGACATCCATCGTGACTTGCCAATTATCATGATTACCTCGCGTACCGGTGAAAAACACCGTGAACGTGCCTTTAG
CTTGGGGGTAACGCACTATATGGGTAAACCGTTCCAGGAAGCAGAATTGCTTGCCAATATTGAAAACATTTTGCATAGCA
GTGAGGCTAAAGCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.735

100

0.617