Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   JYB86_RS02760 Genome accession   NZ_CP070997
Coordinates   578720..579598 (+) Length   292 a.a.
NCBI ID   WP_163142863.1    Uniprot ID   -
Organism   Acinetobacter indicus strain LYS68A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 573720..584598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS02730 (JYB86_02730) wrbA 574532..575128 (+) 597 WP_205779409.1 NAD(P)H:quinone oxidoreductase -
  JYB86_RS02735 (JYB86_02735) - 575427..575609 (+) 183 WP_045796412.1 hypothetical protein -
  JYB86_RS02740 (JYB86_02740) - 575667..576047 (-) 381 WP_005182135.1 hypothetical protein -
  JYB86_RS02745 (JYB86_02745) - 576265..576840 (-) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  JYB86_RS02750 (JYB86_02750) - 576930..577643 (-) 714 WP_205779410.1 DUF3108 domain-containing protein -
  JYB86_RS02755 (JYB86_02755) - 577797..578480 (-) 684 WP_205779412.1 hypothetical protein -
  JYB86_RS02760 (JYB86_02760) tonB2 578720..579598 (+) 879 WP_163142863.1 energy transducer TonB Machinery gene
  JYB86_RS02765 (JYB86_02765) - 579595..579885 (-) 291 WP_168408489.1 antibiotic biosynthesis monooxygenase family protein -
  JYB86_RS02770 (JYB86_02770) ybeY 579974..580456 (-) 483 WP_005182166.1 rRNA maturation RNase YbeY -
  JYB86_RS02775 (JYB86_02775) - 580476..581549 (-) 1074 WP_016659561.1 PhoH family protein -
  JYB86_RS02780 (JYB86_02780) miaB 581591..583045 (-) 1455 WP_005182171.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33068.73 Da        Isoelectric Point: 8.3794

>NTDB_id=542079 JYB86_RS02760 WP_163142863.1 578720..579598(+) (tonB2) [Acinetobacter indicus strain LYS68A]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHAMLDEAAKDSVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=542079 JYB86_RS02760 WP_163142863.1 578720..579598(+) (tonB2) [Acinetobacter indicus strain LYS68A]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCGG
TCAGCTTAAGGCCAAGTGCCACCGAAATTAAGGACGCCGACTTTTTAGCACAGGCCGATCAGCAAGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCCCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
GGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACCACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTGGAAGAATTAAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTGGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTTAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCAGCCGGTTATCTGGAAAAATTCCGTCAGAAAGTCGAATTTTATGGTAACCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGCTGGCCGGTGAAGTACGTTTAATGGTGATTTTAAATGCCAACGGCGGGATTCGCGCGATTCGTTTAATTGAA
AGCTCGGGACATGCCATGCTGGATGAAGCTGCTAAAGACTCAGTACGAAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTGCGTATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

75.986

95.548

0.726