Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   JYB86_RS01945 Genome accession   NZ_CP070997
Coordinates   416709..418931 (-) Length   740 a.a.
NCBI ID   WP_005181868.1    Uniprot ID   N9KVY0
Organism   Acinetobacter indicus strain LYS68A     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411709..423931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS01920 (JYB86_01920) - 411930..412199 (-) 270 WP_034598128.1 YdcH family protein -
  JYB86_RS01925 (JYB86_01925) - 412276..412614 (-) 339 WP_005181858.1 chaperone modulator CbpM -
  JYB86_RS01930 (JYB86_01930) - 413018..413479 (-) 462 WP_180103651.1 DUF2147 domain-containing protein -
  JYB86_RS01935 (JYB86_01935) - 413891..414766 (-) 876 WP_005181862.1 Hsp33 family molecular chaperone HslO -
  JYB86_RS01940 (JYB86_01940) - 414817..416658 (-) 1842 WP_205779340.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  JYB86_RS01945 (JYB86_01945) priA 416709..418931 (-) 2223 WP_005181868.1 primosomal protein N' Machinery gene
  JYB86_RS01950 (JYB86_01950) gspF 419083..420288 (+) 1206 WP_205779342.1 type II secretion system inner membrane protein GspF -
  JYB86_RS01955 (JYB86_01955) gspG 420340..420777 (+) 438 WP_005181871.1 type II secretion system major pseudopilin GspG -
  JYB86_RS01960 (JYB86_01960) - 421057..421392 (+) 336 WP_016659636.1 hypothetical protein -
  JYB86_RS01965 (JYB86_01965) tnpA 421602..421985 (+) 384 WP_205778995.1 IS66-like element accessory protein TnpA -
  JYB86_RS01970 (JYB86_01970) tnpB 421982..422317 (+) 336 WP_002034689.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84221.34 Da        Isoelectric Point: 8.8813

>NTDB_id=542078 JYB86_RS01945 WP_005181868.1 416709..418931(-) (priA) [Acinetobacter indicus strain LYS68A]
MPNSPVHPAPIYRVRVAVPVYLYDGFDYMLSAAEYQQAAVGARVLVSFGRQNLVGIIIEKLPPDHPLDPKIKLKAISELL
DQQPILDQKVLTLLTWSAQYYQFPIGEVMHSALPSLLRQGRPYNLLARMWKLLDDQAEAKLKRSEKQQEAYKVLKLHPSG
TSENILNLAGIETATLKALEKKQICYCDLEQQDFSPVPMTLAQMPLTPNSDQKRAIETVLKAQHRYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLEHCPVILGSATPSIDSYALTEQGKMIRLELNQRAGPALMPKIHI
IDLKVAQKQQGLSLLLIQEIKKRLQKKEQVLIFLNRRGYAPVLVCDSCGWQAQCPHCDANFTLHHSPYTHLHCHHCGTIQ
RKPEQCPQCQHNELKTLGMGTAKVEENLQQLFPDYDVVRVDRDSTSRVGSWQKIYDRIQTSQPLILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHPLLSTLVEQDYRAFARQTLKERQAALL
PPFRYTALIRCESKSQEQNQQFLQQHAQWLRENSEQLIDIWGPIPAPMERKAGRYQAHLVLLSQDRARLHFYLRAWWQNM
LHHKPSNMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=542078 JYB86_RS01945 WP_005181868.1 416709..418931(-) (priA) [Acinetobacter indicus strain LYS68A]
ATGCCAAATTCGCCCGTCCATCCCGCCCCCATCTACCGTGTTCGTGTAGCTGTTCCGGTCTATCTGTATGACGGGTTTGA
CTATATGCTCAGTGCGGCTGAATATCAGCAGGCTGCCGTTGGCGCGCGGGTGCTGGTGTCCTTTGGCCGGCAGAATCTGG
TGGGCATCATTATTGAAAAACTCCCGCCCGATCATCCGCTTGACCCCAAGATTAAACTGAAAGCCATTAGCGAGCTGCTC
GACCAGCAGCCGATTCTAGATCAGAAAGTTTTAACTTTGTTGACATGGTCGGCGCAGTATTATCAGTTTCCGATTGGCGA
AGTGATGCATAGCGCCCTGCCCAGCCTGTTACGTCAGGGACGCCCGTATAATTTACTGGCACGAATGTGGAAACTGCTGG
ATGATCAGGCCGAAGCCAAACTGAAGCGCTCCGAGAAGCAGCAGGAGGCTTATAAAGTCCTGAAGCTGCATCCGAGCGGG
ACCTCAGAAAATATCCTGAATCTGGCCGGTATTGAAACTGCAACCTTAAAAGCGCTGGAAAAAAAGCAGATTTGCTACTG
CGATCTGGAACAGCAGGATTTTAGCCCGGTGCCAATGACGCTGGCGCAAATGCCGTTAACCCCGAACAGTGACCAGAAAC
GGGCCATTGAAACCGTACTGAAAGCGCAGCATCGTTATCAGGCCTTTTTACTCGATGGTCTGACCGGTAGTGGTAAAACC
GAAGTCTATCTGCAGATCATGCAAGAGGTGCTAAAACAGGGTAAACAGGTATTGGTGCTGGTGCCGGAAATTGGCCTGAC
TCCTCAAACCATTAGCCGCTTCCAGTCACGTTTTCACTGTCATATTGCGCTGCTGCATTCCGGTTTAAATGACAGCAAAC
GTCTGCAGGCCTGGCAGGCCGCCCAGACCGGCAAAGCCTCCATTATTCTTGGTACGCGCTCGGCAATTTATACCCCGCTG
CCCAATTTGGGGCTGATTATTCTGGATGAAGAACACGACCTGTCATTTAAACAGCAGGAAGGCTTTCGTTACCATGCCCG
TGATGTGGCCTTATACCGTGCTCATTTAGAACACTGCCCGGTGATTCTCGGTTCGGCCACGCCCAGCATTGACAGCTATG
CCTTAACGGAACAGGGTAAAATGATCCGTCTGGAACTGAACCAGCGTGCCGGCCCGGCACTGATGCCGAAAATTCACATC
ATTGATTTAAAAGTTGCGCAAAAGCAGCAAGGTCTAAGCCTGCTGCTGATTCAGGAAATCAAAAAACGCCTGCAGAAAAA
AGAACAGGTGCTGATTTTCTTAAACCGCCGTGGTTATGCACCGGTGCTGGTCTGTGACAGCTGCGGCTGGCAGGCACAAT
GCCCACACTGTGATGCCAACTTTACCCTGCATCATAGTCCATATACCCATCTGCATTGTCATCATTGTGGCACCATTCAA
CGCAAGCCGGAGCAATGCCCGCAGTGCCAGCATAATGAACTGAAAACCCTGGGCATGGGCACAGCCAAGGTTGAAGAAAA
CCTGCAACAGCTGTTCCCGGATTACGATGTGGTGCGGGTGGACCGCGATTCCACCAGCCGCGTCGGCAGCTGGCAAAAAA
TTTATGACCGCATTCAAACCAGCCAGCCGCTGATTCTGCTCGGCACCCAAATGCTGGCCAAAGGCCACCATTTTCCTTAT
GTGACTCTAGTGGCGATTTTGGATATTGATGCCGGCCTGTTAAGTGTTGATATCCGGGCGCCAGAGCGGACTGCGCAGCT
GATTGTGCAGGTGGCCGGTCGTGCCGGTCGCGGTGAGCATAAAGGCGATGTCTATTTACAGACCCTGCGTCCTGATCATC
CGCTGCTGAGCACGCTGGTCGAGCAGGATTATCGTGCCTTTGCCCGGCAAACCTTAAAAGAACGTCAGGCCGCCCTGCTG
CCCCCATTTCGCTATACCGCCCTGATTCGCTGTGAATCGAAAAGTCAGGAGCAGAACCAGCAGTTTTTACAGCAACATGC
CCAGTGGCTGCGAGAAAATTCTGAACAGTTAATTGATATCTGGGGACCGATTCCGGCGCCAATGGAACGCAAGGCCGGCC
GCTATCAGGCGCATCTGGTGCTGTTGTCGCAAGATCGCGCCCGTTTACATTTTTATCTACGTGCATGGTGGCAAAATATG
TTGCATCACAAGCCATCAAATATGAAACTTAGCTTAGATATAGACCCTCAGGAATTCAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KVY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.45

100

0.736