Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   JYB86_RS01440 Genome accession   NZ_CP070997
Coordinates   305760..306086 (+) Length   108 a.a.
NCBI ID   WP_005181647.1    Uniprot ID   N9MCR8
Organism   Acinetobacter indicus strain LYS68A     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 300760..311086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS01415 (JYB86_01415) hemC 301439..302356 (+) 918 WP_205779766.1 hydroxymethylbilane synthase -
  JYB86_RS01420 (JYB86_01420) - 302358..303137 (+) 780 WP_075167812.1 uroporphyrinogen-III synthase -
  JYB86_RS01425 (JYB86_01425) - 303134..303979 (+) 846 WP_205779301.1 hypothetical protein -
  JYB86_RS01430 (JYB86_01430) - 303982..305175 (+) 1194 WP_104470519.1 hypothetical protein -
  JYB86_RS01435 (JYB86_01435) - 305186..305614 (+) 429 WP_016659684.1 acyl-CoA thioesterase -
  JYB86_RS01440 (JYB86_01440) hns 305760..306086 (+) 327 WP_005181647.1 H-NS family nucleoid-associated regulatory protein Regulator
  JYB86_RS01445 (JYB86_01445) gspN 306250..306990 (+) 741 WP_205779307.1 type II secretion system protein N -
  JYB86_RS01450 (JYB86_01450) - 306990..307826 (+) 837 WP_168397801.1 type II secretion system protein N -
  JYB86_RS01455 (JYB86_01455) gspD 307867..310116 (+) 2250 WP_005181664.1 type II secretion system secretin GspD -
  JYB86_RS01460 (JYB86_01460) - 310183..310890 (+) 708 WP_127799622.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12240.97 Da        Isoelectric Point: 8.4694

>NTDB_id=542074 JYB86_RS01440 WP_005181647.1 305760..306086(+) (hns) [Acinetobacter indicus strain LYS68A]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=542074 JYB86_RS01440 WP_005181647.1 305760..306086(+) (hns) [Acinetobacter indicus strain LYS68A]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACAGGTCGTGGTAAGCAACCGCGCTGGTTAGTGGCAGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852