Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   JYB86_RS01040 Genome accession   NZ_CP070997
Coordinates   217348..218505 (-) Length   385 a.a.
NCBI ID   WP_016658990.1    Uniprot ID   V2UEN4
Organism   Acinetobacter indicus strain LYS68A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 212348..223505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS01015 (JYB86_01015) - 212624..213232 (-) 609 WP_168408783.1 hypothetical protein -
  JYB86_RS01020 (JYB86_01020) - 213415..213957 (-) 543 WP_005181445.1 glutathione peroxidase -
  JYB86_RS01025 (JYB86_01025) - 214286..215197 (+) 912 WP_005181447.1 DMT family transporter -
  JYB86_RS01030 (JYB86_01030) - 215578..216144 (-) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  JYB86_RS01035 (JYB86_01035) dprA 216189..217331 (-) 1143 WP_005181456.1 DNA-processing protein DprA Machinery gene
  JYB86_RS01040 (JYB86_01040) tsaP 217348..218505 (-) 1158 WP_016658990.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  JYB86_RS01045 (JYB86_01045) def 218625..219149 (+) 525 WP_005181462.1 peptide deformylase -
  JYB86_RS01050 (JYB86_01050) - 219240..219662 (+) 423 WP_016658991.1 DUF2946 family protein -
  JYB86_RS01055 (JYB86_01055) - 219736..221754 (+) 2019 WP_205779281.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42521.54 Da        Isoelectric Point: 8.8330

>NTDB_id=542069 JYB86_RS01040 WP_016658990.1 217348..218505(-) (tsaP) [Acinetobacter indicus strain LYS68A]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDGRPIIGKDEGDGCEGIIRRYTGNTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQQTPYILGTADQRVLAAKGQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIAADGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIMED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=542069 JYB86_RS01040 WP_016658990.1 217348..218505(-) (tsaP) [Acinetobacter indicus strain LYS68A]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACTGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAACCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGCCTGCTGATGTGTACCTA
TGATGGCCGCCCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGTATTATCCGTCGTTATACCGGTAACACCACCA
GCCTGCAGCCGCAAATCCGGGTCGAGTCACTCAACAATACCATTCCGGTGATTCCACTGGAGTACATCCAGCACTGGCTG
GAACGTACCAGCATTATTGCCCCTGAATCTTTGCAACAGACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTCCTGGC
GGCCAAAGGCCAGAATGTCTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCTGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTTGCATCCGGTATTGCAGTA
CGCGGTGAAAATGATATTACCACCCTGGAACTGACCGATACCTACAATGCCGAAGTGCGTCGTGGCGATCGTGTGCTGCC
AGAATATGACCCGATGTTACCAACCCTATTCTACCCGACCAATGCCGAACACATTGCAGCAGATGGCCAGGTGGTACGCG
TGATGGGTTCAATTGGTACCGCAGCTAAACACAGTGTGGTCACCATTGACCGTGGTCAGGCGCACGGCGTGCAATCCGGT
CATGTATTTGCGGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
TATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAACTACCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATGGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V2UEN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.662