Detailed information NTG0541890

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: C5N09_RS00295
• Genome accession: NZ_CP086338
• Coordinates: 47621..48646 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain EJN001
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 42621..53646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5N09_RS00265 (C5N09_000260)	zapB	42705..42950 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
C5N09_RS00270 (C5N09_000265)	rraA	43035..43520 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
C5N09_RS00275 (C5N09_000270)	menA	43613..44539 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
C5N09_RS00280 (C5N09_000275)	hslU	44606..45937 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
C5N09_RS00285 (C5N09_000280)	hslV	45947..46477 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
C5N09_RS00290 (C5N09_000285)	ftsN	46570..47529 (-)	960	WP_000068828.1	cell division protein FtsN	-
C5N09_RS00295 (C5N09_000290)	cytR	47621..48646 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
C5N09_RS00300 (C5N09_000295)	priA	48802..51000 (-)	2199	WP_001333520.1	primosomal protein N'	Machinery gene
C5N09_RS00305 (C5N09_000300)	rpmE	51203..51415 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
C5N09_RS00310 (C5N09_000305)	yiiX	51476..52084 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
C5N09_RS00315 (C5N09_000310)	metJ	52268..52585 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=541890 C5N09_RS00295 WP_000644904.1 47621..48646(-) (cytR) [Escherichia coli strain EJN001]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=541890 C5N09_RS00295 WP_000644904.1 47621..48646(-) (cytR) [Escherichia coli strain EJN001]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
TTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628