Detailed information NTG0541876

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: C5N11_RS21280
• Genome accession: NZ_CP086336
• Coordinates: 4395183..4396166 (-)
• Length: 327 a.a.
• NCBI ID: WP_001196486.1
• Uniprot ID: A7ZT85
• Organism: Escherichia coli strain EBJ001
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 4390183..4401166

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5N11_RS21255 (C5N11_021275)	bcsF	4390344..4390535 (+)	192	WP_000988308.1	cellulose biosynthesis protein BcsF	-
C5N11_RS21260 (C5N11_021280)	bcsG	4390532..4392211 (+)	1680	WP_000191619.1	cellulose biosynthesis protein BcsG	-
C5N11_RS21265 (C5N11_021285)	ldrD	4392298..4392405 (-)	108	WP_000141634.1	type I toxin-antitoxin system toxic polypeptide LdrD	-
C5N11_RS21270 (C5N11_021290)	yhjV	4392881..4394152 (+)	1272	WP_001295225.1	aromatic amino acid transport family protein	-
C5N11_RS21275 (C5N11_021295)	dppF	4394182..4395186 (-)	1005	WP_000107012.1	dipeptide ABC transporter ATP-binding subunit DppF	-
C5N11_RS21280 (C5N11_021300)	amiE	4395183..4396166 (-)	984	WP_001196486.1	dipeptide ABC transporter ATP-binding protein	Regulator
C5N11_RS21285 (C5N11_021305)	dppC	4396177..4397079 (-)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
C5N11_RS21290 (C5N11_021310)	dppB	4397089..4398108 (-)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
C5N11_RS21295 (C5N11_021315)	dppA	4398416..4400023 (-)	1608	WP_001222883.1	dipeptide ABC transporter substrate-binding protein DppA	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35844.36 Da
• Isoelectric Point: 6.5814

>NTDB_id=541876 C5N11_RS21280 WP_001196486.1 4395183..4396166(-) (amiE) [Escherichia coli strain EBJ001]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=541876 C5N11_RS21280 WP_001196486.1 4395183..4396166(-) (amiE) [Escherichia coli strain EBJ001]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCGCCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCCGGTAAGTCGGTCAGTTCACTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCAGAAAAACTGGAGTTTAACGGCCAGGATTTGCAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGAGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATGGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTACTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATCATCGTGATGTATGCAGGCCAGGTGGTGGAAACCGGTGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCAGAATTTGCTCAGGACAAAGAACGTCT
GGCGTCGTTGCCAGGTGTCGTTCCCGGCAAGTACGACCGCCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTATGCCA
CTGACAGATGTCGCGCTGAAGAACCGGCGCTGAATATGCTCGCTGACGGGCGTCAGTCCAAATGCCATTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

• ABC transporter (ABC_tran) (24-181)

3D structure

• AlphaFold DB: A7ZT85

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMG 18311	42.991	98.165	0.422
amiE	Streptococcus thermophilus LMD-9	42.991	98.165	0.422
oppD	Streptococcus mutans UA159	41.379	97.554	0.404