Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   C5N11_RS20870 Genome accession   NZ_CP086336
Coordinates   4296267..4297760 (-) Length   497 a.a.
NCBI ID   WP_001040654.1    Uniprot ID   P10121
Organism   Escherichia coli strain EBJ001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4291267..4302760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5N11_RS20845 (C5N11_020865) panM 4291501..4291884 (+) 384 WP_000778768.1 aspartate 1-decarboxylase autocleavage activator PanM -
  C5N11_RS20850 (C5N11_020870) livJ 4292072..4293175 (-) 1104 WP_001021996.1 branched chain amino acid ABC transporter substrate-binding protein LivJ -
  C5N11_RS20855 (C5N11_020875) rpoH 4293446..4294300 (-) 855 WP_000130217.1 RNA polymerase sigma factor RpoH -
  C5N11_RS20860 (C5N11_020880) ftsX 4294545..4295603 (-) 1059 WP_001042003.1 permease-like cell division protein FtsX -
  C5N11_RS20865 (C5N11_020885) ftsE 4295596..4296264 (-) 669 WP_000617723.1 cell division ATP-binding protein FtsE -
  C5N11_RS20870 (C5N11_020890) pilA 4296267..4297760 (-) 1494 WP_001040654.1 signal recognition particle-docking protein FtsY Machinery gene
  C5N11_RS20875 (C5N11_020895) rsmD 4297910..4298506 (+) 597 WP_000743193.1 16S rRNA (guanine(966)-N(2))-methyltransferase -
  C5N11_RS20880 (C5N11_020900) yhhL 4298496..4298765 (+) 270 WP_001311191.1 DUF1145 family protein -
  C5N11_RS20885 (C5N11_020905) yhhM 4298768..4299127 (-) 360 WP_000042895.1 DUF2500 domain-containing protein -
  C5N11_RS20890 (C5N11_020910) yhhN 4299268..4299894 (+) 627 WP_000964718.1 lysoplasmalogenase -
  C5N11_RS20895 (C5N11_020915) zntA 4299968..4302166 (+) 2199 WP_000106551.1 Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA -
  C5N11_RS20900 (C5N11_020920) tusA 4302268..4302513 (-) 246 WP_000130621.1 sulfurtransferase TusA -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 54513.35 Da        Isoelectric Point: 4.1560

>NTDB_id=541874 C5N11_RS20870 WP_001040654.1 4296267..4297760(-) (pilA) [Escherichia coli strain EBJ001]
MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAE
SEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELETALA
AEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADV
GVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ
GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKI
VRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERIEDL
RPFKADDFIEALFARED

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=541874 C5N11_RS20870 WP_001040654.1 4296267..4297760(-) (pilA) [Escherichia coli strain EBJ001]
ATGGCGAAAGAAAAAAAACGTGGCTTTTTTTCCTGGCTGGGCTTTGGTCAAAAAGAGCAGACCCCGGAAAAAGAGACAGA
AGTTCAGAATGAACAACCGGTTGTAGAAGAAATCGTTCAGGCGCAAGAGCCTGTGAAGGCCTCTGAACAAGCCGTTGAAG
AGCAGCCGCAAGCGCATACTGAAGCCGAGGCGGAAACTTTTGCTGCCGACGTTGTGGAAGTCACTGAACAGGTTGCTGAA
AGTGAAAAAGCGCAGCCTGAAGCGGAAGTCGTTGCACAGCCGGAACCGGTCGTAGAAGAAACGCCGGAGCCAGTGGCTAT
CGAACGTGAAGAGCTGCCGTTGCCGGAAGACGTCAACGCCGAAGCGGTTTCGCCAGAAGAGTGGCAGGCTGAAGCGGAAA
CCGTAGAGATTGTCGAAGCGGCGGAAGAAGAAGCGGCTAAAGAAGAAATTACCGACGAAGAGCTGGAAACGGCGCTGGCT
GCCGAAGCGGCAGAAGAGGCGGTGATGGTGGTTCCTCCGGCAGAAGAAGAGCAGCCGGTGGAAGAAATCGCTCAGGAGCA
GGAAAAACCGACCAAAGAAGGTTTTTTCGCGCGCCTGAAACGCAGCCTGTTAAAAACCAAAGAAAATCTCGGTTCCGGAT
TTATCAGCCTGTTCCGCGGTAAAAAAATCGACGATGATCTGTTTGAGGAGCTGGAAGAGCAGCTTTTGATCGCCGATGTG
GGTGTGGAAACCACACGTAAAATTATCACCAATCTGACGGAAGGCGCATCCCGCAAGCAGCTTCGTGACGCCGAGGCGCT
CTATGGCCTGCTGAAAGAAGAGATGGGCGAGATTCTGGCGAAAGTCGATGAGCCGCTGAATGTTGAAGGCAAAGCGCCGT
TTGTGATCCTGATGGTGGGCGTCAACGGTGTGGGTAAAACCACGACGATTGGTAAGCTGGCGCGTCAGTTTGAGCAGCAG
GGTAAATCGGTGATGCTGGCGGCGGGTGATACTTTCCGTGCAGCTGCGGTTGAACAGCTTCAGGTCTGGGGTCAGCGCAA
CAATATTCCGGTGATTGCCCAGCATACCGGGGCGGATTCCGCCTCTGTTATCTTCGACGCCATTCAGGCAGCTAAAGCGC
GTAATATCGACGTCCTGATTGCCGATACAGCCGGACGCCTGCAGAACAAATCGCACCTGATGGAAGAGTTGAAGAAAATC
GTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGC
GGTAAGCCAGGCCAAACTGTTCCATGAAGCCGTTGGCTTAACCGGCATCACGCTAACGAAACTGGACGGCACGGCGAAAG
GCGGGGTAATTTTCTCGGTGGCTGACCAGTTTGGTATCCCTATCCGCTACATTGGTGTCGGCGAACGTATTGAGGATTTG
CGTCCGTTTAAGGCGGACGACTTTATAGAGGCACTTTTTGCCCGAGAGGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(210-275)

SRP54-type protein, GTPase domain (SRP54)

(293-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1FTS
  PDB 2QY9
  PDB 2XXA
  PDB 2YHS
  PDB 3ZN8
  PDB 4C7O
  PDB 5GAD
  PDB 5NCO
  PDB 5NIY
  PDB 6CQP
  PDB 6CS8
  PDB 6CVD
  PDB 6DLX
  PDB 6FPK
  PDB 6FPR
  PDB 6FQD
  PDB 6N5I
  PDB 6N5J
  PDB 6N6N
  PDB 6N9B
  PDB 6NC1
  PDB 6NC4
  PDB 7O9H

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.698

77.264

0.376