Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JYG34_RS22505 Genome accession   NZ_CP070982
Coordinates   5135544..5136911 (-) Length   455 a.a.
NCBI ID   WP_011535790.1    Uniprot ID   Q1I4K8
Organism   Pseudomonas entomophila strain Small     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5130544..5141911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG34_RS22485 (JYG34_22485) - 5131490..5132509 (-) 1020 WP_249746191.1 efflux RND transporter periplasmic adaptor subunit -
  JYG34_RS22490 (JYG34_22490) - 5132714..5133865 (-) 1152 WP_213658398.1 acyl-CoA dehydrogenase family protein -
  JYG34_RS26525 (JYG34_22495) - 5134116..5134301 (-) 186 WP_011535780.1 tautomerase family protein -
  JYG34_RS22500 (JYG34_22500) - 5134443..5135528 (+) 1086 WP_213658399.1 LLM class flavin-dependent oxidoreductase -
  JYG34_RS22505 (JYG34_22505) radA 5135544..5136911 (-) 1368 WP_011535790.1 DNA repair protein RadA Machinery gene
  JYG34_RS22510 (JYG34_22510) mscL 5137090..5137503 (+) 414 WP_213658400.1 large-conductance mechanosensitive channel protein MscL -
  JYG34_RS22515 (JYG34_22515) - 5137565..5138341 (-) 777 WP_213658401.1 ferredoxin--NADP reductase -
  JYG34_RS22520 (JYG34_22520) - 5138556..5139260 (+) 705 Protein_4412 autoinducer binding domain-containing protein -
  JYG34_RS22525 (JYG34_22525) - 5139357..5140481 (+) 1125 WP_213658402.1 methyltransferase -
  JYG34_RS22530 (JYG34_22530) - 5140569..5140709 (-) 141 WP_213658403.1 DUF2474 domain-containing protein -
  JYG34_RS22535 (JYG34_22535) cydB 5140722..5141729 (-) 1008 WP_213658404.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48711.15 Da        Isoelectric Point: 6.8984

>NTDB_id=541857 JYG34_RS22505 WP_011535790.1 5135544..5136911(-) (radA) [Pseudomonas entomophila strain Small]
MAKAKRLYGCTECGATFPKWAGQCGDCGAWNTLVETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVQMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=541857 JYG34_RS22505 WP_011535790.1 5135544..5136911(-) (radA) [Pseudomonas entomophila strain Small]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAGTGGGCCGGCCAGTGCGGCGACTG
CGGTGCCTGGAACACCCTGGTCGAAACCATGATCGAGAGCGGCGGCGCTGCCGCGCCGAGCGGCCGTGCCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAGGTGAGCGTCGAGGAGATCCCGCGCTTCACCACCAGCAGCACCGAGCTC
GACCGGGTGCTGGGGGGCGGCCTGGTGGACGGCTCCGTGGTGCTGATCGGTGGCGACCCCGGCATCGGCAAGTCGACCAT
CCTCCTGCAGACCTTGTGCAACATCGCCGTGCAGATGCCCGCGCTGTACGTCACCGGCGAGGAGTCGCAGCAACAGGTGG
CCATGCGTTCGCGGCGCCTGGGCCTGCCCCAGGACCAGCTCAAGGTGATGACCGAGACCTGCATCGAAACCATCATCGCC
ACTGCCCGTGTGGAGAAACCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAGTCGGCCCC
CGGCGGCGTGGCCCAGGTGCGCGAGAGCACGGCGCTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCATGTCACCAAGGAAGGCTCGTTGGCCGGCCCACGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGTGAGTCCGATGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACCGGGGCTTGAAAGAAGTCTCGAACCCTTCGGCGATCTTCCTCAACCGCACCCAGGAAGAAGTGCCAGGCA
GTGTGGTCATGGCCACGTGGGAGGGGACCCGGCCGATGCTGGTGGAGGTGCAGGCATTGGTCGACGACAGCCACCTGGCC
AACCCGCGCCGGGTCACGCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
CCCCACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACCGCCTCCGACCTGGCGTTGC
TGGCGGCAGTGATGTCGAGCCTGCGCAACCGCCCGCTGGCCCATGGCCTGCTGGTGTTCGGCGAGATCGGCCTGTCGGGC
GAGGTACGCCCGGTCCCCAGTGGCCAGGAACGCCTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAACGCCCCGAAGGAAGCGCCGGCGGGCCTGCAGGTGATCGCCGTGACCCGCCTTGAACAGGCGCTGGATGCGTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1I4K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus mitis NCTC 12261

45.969

100

0.464
  radA Streptococcus mitis SK321

46.154

100

0.462