Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JYG38_RS22525 Genome accession   NZ_CP070981
Coordinates   5028779..5030146 (-) Length   455 a.a.
NCBI ID   WP_017528869.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain DLA23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5023779..5035146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG38_RS22500 (JYG38_22500) yjiA 5024097..5025056 (-) 960 WP_034100832.1 GTPase -
  JYG38_RS22505 (JYG38_22505) - 5025209..5025406 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  JYG38_RS22510 (JYG38_22510) - 5025422..5027488 (-) 2067 WP_034100834.1 carbon starvation CstA family protein -
  JYG38_RS22515 (JYG38_22515) - 5027663..5028031 (+) 369 WP_034139370.1 PilZ domain-containing protein -
  JYG38_RS22520 (JYG38_22520) - 5028034..5028762 (-) 729 WP_034139371.1 hypothetical protein -
  JYG38_RS22525 (JYG38_22525) radA 5028779..5030146 (-) 1368 WP_017528869.1 DNA repair protein RadA Machinery gene
  JYG38_RS22530 (JYG38_22530) - 5030182..5030721 (-) 540 WP_034100840.1 ankyrin repeat domain-containing protein -
  JYG38_RS22535 (JYG38_22535) katB 5030780..5032321 (-) 1542 WP_094066019.1 catalase KatB -
  JYG38_RS22540 (JYG38_22540) mscL 5032609..5033025 (+) 417 WP_034100843.1 large-conductance mechanosensitive channel protein MscL -
  JYG38_RS22545 (JYG38_22545) - 5033071..5033847 (-) 777 WP_040265491.1 ferredoxin--NADP reductase -
  JYG38_RS22550 (JYG38_22550) - 5034306..5035018 (+) 713 Protein_4460 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48701.19 Da        Isoelectric Point: 6.8987

>NTDB_id=541831 JYG38_RS22525 WP_017528869.1 5028779..5030146(-) (radA) [Pseudomonas rhodesiae strain DLA23]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=541831 JYG38_RS22525 WP_017528869.1 5028779..5030146(-) (radA) [Pseudomonas rhodesiae strain DLA23]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCGGCGAATG
CGGGGCGTGGAACACCCTGACGGAAACCATGATCGAGAGCGGCGGGGCGGCGGCGCCTACCGGTCGCGCCGGCTGGACCG
GGCAACAAGCGCAGATCAAAACCCTGGCTGAAGTCAGCGTCGAAGAAATCCCACGTTTTTCCACGGCCTCCGGCGAACTT
GACCGGGTGCTGGGCGGCGGCCTGGTGGATGGCTCAGTGGTGCTGATCGGCGGCGACCCAGGCATCGGCAAGTCGACCAT
CCTGTTGCAGACCTTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGTGAAGAATCCCAGCAACAAGTGG
CCATGCGCGCCCGCCGTTTAGGCCTGCCCCAGGATCAGTTGCGGGTGATGACCGAGACCTGCATCGAAAGCATCATCGCC
ACGGCGCGGATCGAAAAGCCGAAAGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAATTGCAGTCGGCGCC
GGGGGGCGTGTCCCAGGTGCGTGAGAGCGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACTAAAGAAGGCGCCTTGGCCGGGCCTCGGGTGCTGGAACATATGGTCGACACGGTTTTGTATTTCGAG
GGCGAGTCCGACGGCCGTCTGCGCTTGTTGCGGGCAGTGAAAAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTATTCGC
CATGACCGACCGCGGGTTGAAAGAAGTCTCCAACCCTTCGGCGATTTTCCTGACTCGCGCTCAAGAAGAAGTCCCCGGTA
GCGTGGTAATGGCGACGTGGGAAGGCACCCGGCCAATGTTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCGCGCCGCGTCACCCTTGGCTTGGATCAGAACCGTCTGGCGATGCTGCTCGCGGTGCTGCACCGCCATGGCGGCAT
TCCGACCCACGATCAAGACGTGTTCCTTAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCGGACCTGGCATTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCGTTGCCCCACGACTTGTTGGTATTCGGTGAGGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGTCAGGAACGTCTCAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCGGCGGGGTTGCAGATCATTGCGGTGACGCGACTGGAGCAGGCGCTGGATGCACTTT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus mitis NCTC 12261

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466