Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JYG35_RS23355 Genome accession   NZ_CP070980
Coordinates   5138140..5139507 (-) Length   455 a.a.
NCBI ID   WP_017528869.1    Uniprot ID   -
Organism   Pseudomonas rhodesiae strain AAMF24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5133140..5144507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG35_RS23330 (JYG35_23330) yjiA 5133459..5134418 (-) 960 WP_034100832.1 GTPase -
  JYG35_RS23335 (JYG35_23335) - 5134570..5134767 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  JYG35_RS23340 (JYG35_23340) - 5134783..5136849 (-) 2067 WP_034100834.1 carbon starvation CstA family protein -
  JYG35_RS23345 (JYG35_23345) - 5137024..5137392 (+) 369 WP_040265486.1 PilZ domain-containing protein -
  JYG35_RS23350 (JYG35_23350) - 5137395..5138123 (-) 729 WP_213548055.1 hypothetical protein -
  JYG35_RS23355 (JYG35_23355) radA 5138140..5139507 (-) 1368 WP_017528869.1 DNA repair protein RadA Machinery gene
  JYG35_RS23360 (JYG35_23360) - 5139543..5140082 (-) 540 WP_213548057.1 ankyrin repeat domain-containing protein -
  JYG35_RS23365 (JYG35_23365) katB 5140140..5141681 (-) 1542 WP_213548059.1 catalase KatB -
  JYG35_RS23370 (JYG35_23370) mscL 5141969..5142385 (+) 417 WP_034100843.1 large-conductance mechanosensitive channel protein MscL -
  JYG35_RS23375 (JYG35_23375) - 5142432..5143208 (-) 777 WP_034100845.1 ferredoxin--NADP reductase -
  JYG35_RS23380 (JYG35_23380) - 5143667..5144377 (+) 711 WP_034100847.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48701.19 Da        Isoelectric Point: 6.8987

>NTDB_id=541809 JYG35_RS23355 WP_017528869.1 5138140..5139507(-) (radA) [Pseudomonas rhodesiae strain AAMF24]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=541809 JYG35_RS23355 WP_017528869.1 5138140..5139507(-) (radA) [Pseudomonas rhodesiae strain AAMF24]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCGGCGAGTG
CGGGGCGTGGAACACCCTGACGGAAACCATGATAGAGAGCGGCGGGGCGGCGGCGCCTACCGGTCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAAACCCTGGCTGAAGTCAGCGTCGAAGAAATCCCGCGTTTTTCCACGGCATCCGGCGAACTT
GACCGGGTGCTGGGCGGCGGCTTGGTGGATGGCTCAGTGGTGCTGATCGGCGGCGACCCAGGCATCGGTAAGTCGACCAT
CCTGTTGCAGACCTTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGTGAAGAATCCCAGCAACAAGTGG
CCATGCGCGCCCGTCGTCTGGGCCTGCCCCAGGACCAGTTGCGGGTGATGACCGAGACCTGCATCGAAAGCATCATCGCC
ACGGCGCGGATCGAAAAGCCGAAAGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAATTGCAGTCGGCGCC
GGGCGGCGTGTCCCAGGTGCGTGAGAGCGCGGCGCTGCTGGTGCGTTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TCGGCCATGTGACCAAAGAAGGCGCCTTGGCCGGGCCTCGGGTGCTGGAACATATGGTCGACACGGTTTTGTATTTCGAG
GGCGAGTCCGACGGCCGTCTGCGCTTGTTGCGGGCAGTGAAAAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTATTCGC
CATGACCGACCGCGGGTTGAAAGAAGTCTCCAACCCTTCGGCGATTTTCCTGACTCGCGCTCAAGAAGAAGTCCCCGGTA
GCGTGGTAATGGCGACGTGGGAAGGCACCCGGCCAATGTTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCACTTGGCC
AACCCGCGCCGCGTCACCCTTGGCTTGGATCAGAACCGTCTGGCGATGCTGCTCGCGGTGCTGCACCGCCATGGCGGCAT
TCCGACCCACGATCAAGACGTGTTCCTTAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGTCGGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCATTGCCCCACGACCTGTTGGTATTTGGTGAGGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGTCAGGAACGTCTCAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAACGCGCCGAAGGAAGCGCCGGCGGGGTTGCAGATCATTGCGGTGACGCGACTGGAGCAGGCGCTGGATGCACTTT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus mitis NCTC 12261

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466