Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   JYG32_RS16585 Genome accession   NZ_CP070977
Coordinates   3566921..3568423 (-) Length   500 a.a.
NCBI ID   WP_174382774.1    Uniprot ID   -
Organism   Burkholderia pyrrocinia strain Hargis     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3561921..3573423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG32_RS16560 (JYG32_16560) - 3562950..3563585 (-) 636 WP_174382772.1 LON peptidase substrate-binding domain-containing protein -
  JYG32_RS16565 (JYG32_16565) rapZ 3563613..3564521 (-) 909 WP_213264124.1 RNase adapter RapZ -
  JYG32_RS16570 (JYG32_16570) hprK 3564597..3565565 (-) 969 WP_011353227.1 HPr(Ser) kinase/phosphatase -
  JYG32_RS16575 (JYG32_16575) - 3565694..3566206 (-) 513 WP_034195643.1 PTS sugar transporter subunit IIA -
  JYG32_RS16580 (JYG32_16580) raiA 3566404..3566763 (-) 360 WP_006477786.1 ribosome-associated translation inhibitor RaiA -
  JYG32_RS16585 (JYG32_16585) rpoN/rpoN1 3566921..3568423 (-) 1503 WP_174382774.1 RNA polymerase factor sigma-54 Machinery gene
  JYG32_RS16590 (JYG32_16590) lptB 3568584..3569360 (-) 777 WP_174382775.1 LPS export ABC transporter ATP-binding protein -
  JYG32_RS16595 (JYG32_16595) lptA 3569357..3570022 (-) 666 WP_069747016.1 lipopolysaccharide transport periplasmic protein LptA -
  JYG32_RS16600 (JYG32_16600) lptC 3570043..3570657 (-) 615 WP_174382776.1 LPS export ABC transporter periplasmic protein LptC -
  JYG32_RS16605 (JYG32_16605) - 3570661..3571197 (-) 537 WP_174382777.1 HAD family hydrolase -
  JYG32_RS16610 (JYG32_16610) kdsD 3571197..3572180 (-) 984 WP_174382778.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 54736.81 Da        Isoelectric Point: 4.8740

>NTDB_id=541788 JYG32_RS16585 WP_174382774.1 3566921..3568423(-) (rpoN/rpoN1) [Burkholderia pyrrocinia strain Hargis]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRVASDGSLIAQTPPAQNTEPAV
SNGSSSSSDRAERDEPAGADEYDYASGDGNDGPQWNLDEFGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQAGPR
DRALVMFLIESLDDDGYLTATLDEVLADLPSELEIDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTLA
LEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIFVKKAGQGWLAELNPEVVPR
LRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLGL
HESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVARR
TVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=541788 JYG32_RS16585 WP_174382774.1 3566921..3568423(-) (rpoN/rpoN1) [Burkholderia pyrrocinia strain Hargis]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACATCTGGCGCTGACGCCCCAGCTACAGCAGTCGATCCGGCTCCTGCA
GTTGTCGACGCTCGAATTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAACCCGCTGCTCGAGAACGACGACGAGTGGA
TCGCGAGCCCGCTGCGCGTCGCGTCGGACGGATCGCTGATCGCGCAGACGCCGCCCGCACAGAACACCGAGCCGGCCGTG
TCGAACGGCAGCAGCTCGTCGAGCGATCGCGCGGAGCGCGACGAGCCGGCCGGCGCCGACGAATACGATTATGCGTCCGG
CGACGGCAACGACGGCCCGCAATGGAATCTCGACGAATTCGGCCGCTCGAGCGGCGCGTCCGACGACGACGACCTCCCGC
CGCTGCAGGTGCAGGAAGCCGCGACGTCGCTGCGCGACCACCTGTCCGCGCAGTTGCGCGTCACGCAGGCCGGCCCGCGC
GATCGTGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCCACGCTCGACGAAGTGCTCGC
CGACCTGCCGTCCGAGCTGGAGATCGACTGCGACGAACTGAATGCGGCGCTCGCGCTGCTGCACAGCTTCGACCCGGCCG
GGGTCGGCGCCCGCTCGGCATCCGAATGCCTGAAGCTGCAGTTGCTGCGCCTCGATCCGTCCCCGACGCGTACGCTCGCG
CTCGAGATCGTGTCGCAGCATCTCGAACTGCTCGCCGCACGCGATTTCACGCGGTTGCGCAAGCACCTGAAGGCGAGCGA
CGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCCGGCGCCGCGTACGGCAAGGCCGAGGCCG
ACTACGTCGTGCCCGACATCTTCGTGAAGAAGGCCGGCCAGGGATGGCTCGCGGAGCTCAATCCGGAGGTCGTGCCGCGC
CTGCGGATCAACAACCTCTACGCGAACATCCTGCGCAACAGCCGCGGCGATCCGTCGGCTGGTTCGCTGAAGCAGCAGCT
TCAGGAAGCACGCTGGCTGATCAAGAACATTCAGCAGCGTTTCGACACGATCCTGCGTGTCGCGCAGGCTATTGTCGAGC
GTCAGAAGAATTTCTTTGCGCACGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGCCTA
CACGAGTCGACTGTCAGCCGTGTGACAACCGGGAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTACTTCTT
CGGATCTCACGTTTCGACCGACACCGGTGGCGCCGCCTCGTCGACCGCCATCCGAGCCCTCATCAAGCAACTGATAGGAG
CTGAAGACCCAAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGTTTCGTGGTCGCGCGCCGC
ACGGTTGCCAAATATCGCGAAGCCCTCAAGATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(343-498)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.921

100

0.686