Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JYG32_RS02535 Genome accession   NZ_CP070977
Coordinates   546402..547778 (+) Length   458 a.a.
NCBI ID   WP_174382549.1    Uniprot ID   -
Organism   Burkholderia pyrrocinia strain Hargis     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 541402..552778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG32_RS02515 (JYG32_02515) - 541942..542907 (+) 966 WP_213264542.1 DUF1853 family protein -
  JYG32_RS02520 (JYG32_02520) thiD 542926..543735 (-) 810 WP_213264543.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JYG32_RS02525 (JYG32_02525) lplT 543794..545101 (-) 1308 WP_174382547.1 lysophospholipid transporter LplT -
  JYG32_RS02530 (JYG32_02530) alr 545320..546390 (+) 1071 WP_174382548.1 alanine racemase -
  JYG32_RS02535 (JYG32_02535) radA 546402..547778 (+) 1377 WP_174382549.1 DNA repair protein RadA Machinery gene
  JYG32_RS02540 (JYG32_02540) - 547925..548191 (+) 267 WP_174382550.1 DUF2866 domain-containing protein -
  JYG32_RS02545 (JYG32_02545) - 548334..550265 (-) 1932 WP_213264544.1 ATP-binding cassette domain-containing protein -
  JYG32_RS02550 (JYG32_02550) - 550402..550881 (+) 480 WP_174382552.1 glutathione peroxidase -
  JYG32_RS02555 (JYG32_02555) cls 550945..552393 (-) 1449 WP_213264545.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48901.28 Da        Isoelectric Point: 6.7606

>NTDB_id=541778 JYG32_RS02535 WP_174382549.1 546402..547778(+) (radA) [Burkholderia pyrrocinia strain Hargis]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPSAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLADIASERRALYISGEESAAQIALRAQRLALLDGGTPAAELQLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLFVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVERIEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=541778 JYG32_RS02535 WP_174382549.1 546402..547778(+) (radA) [Burkholderia pyrrocinia strain Hargis]
GTGGCCAAACAGAAAACCGTCTATGTCTGCAGCGAGTGCGGCGGGCAGACCCCGAAGTGGCAGGGGCAGTGTCCGTCGTG
CCAGGCCTGGAACACGCTCGTCGAATCGGTCGCCGAGTCGCCGTCGGCCCACCGTTTCCAGTCGCTCGCGAAGCGGGCGC
CCGTCCAGCGACTCGTCGACATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGCATCGGCGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTTCCCGGCGGCGTCGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCGAGCGGCGCGCGCTCTATATCAGCGGCGAAGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTACGCCGGCAGCCGAGCTGCAGCTGCTCGCCGAGATCCAGCTCGAAAAGATCCAG
GCCGCGATCGACGCGGAACGGCCGGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAGGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAACAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAGGGCAACCTCGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAAGGCGACACGCATTCGTCGTTCCGGCTCGTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGCGTCGCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAGCAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGTCCGCTGCTCGTCGAAATCCAGGCGCTCGTCGATACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCAGTGGGTGGCGTGAAGATCACCGAGCCGGCTGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGTTGTTCGTGTTTGGCGAGGTGGGGCTGGCG
GGCGAAATCCGGCCGTCCCCGCGCGGGCAGGAACGGCTGCGCGAGGCGGCGAAGCTCGGCTTCACGTCCGCGCTGATCCC
GAAGGCGAATGCACCGAAACAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGAGCGCATCGAGCAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.458

100

0.498
  radA Streptococcus pneumoniae Rx1

47.403

100

0.478
  radA Streptococcus pneumoniae D39

47.403

100

0.478
  radA Streptococcus pneumoniae R6

47.403

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.403

100

0.478
  radA Streptococcus mitis SK321

47.712

100

0.478
  radA Streptococcus mitis NCTC 12261

47.38

100

0.474