Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JYG31_RS13890 Genome accession   NZ_CP070976
Coordinates   2683534..2683959 (-) Length   141 a.a.
NCBI ID   WP_101861068.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2678534..2688959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS21965 - 2678773..2678907 (-) 135 WP_010335019.1 hypothetical protein -
  JYG31_RS13865 (JYG31_13865) - 2678985..2679716 (-) 732 WP_024122120.1 SGNH/GDSL hydrolase family protein -
  JYG31_RS13870 (JYG31_13870) - 2679963..2680715 (-) 753 WP_101861065.1 N-acetylmuramoyl-L-alanine amidase -
  JYG31_RS13875 (JYG31_13875) - 2680910..2681536 (+) 627 WP_024122122.1 TVP38/TMEM64 family protein -
  JYG31_RS13880 (JYG31_13880) gnd 2681558..2682451 (-) 894 WP_213417750.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  JYG31_RS13885 (JYG31_13885) - 2682772..2683500 (+) 729 WP_213417751.1 DUF308 domain-containing protein -
  JYG31_RS13890 (JYG31_13890) nucA/comI 2683534..2683959 (-) 426 WP_101861068.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JYG31_RS13895 (JYG31_13895) sigK 2684136..2684864 (+) 729 WP_174754429.1 RNA polymerase sporulation sigma factor SigK -
  JYG31_RS13900 (JYG31_13900) fumC 2685435..2686823 (-) 1389 WP_213417752.1 class II fumarate hydratase -
  JYG31_RS13905 (JYG31_13905) - 2686990..2687880 (+) 891 WP_213417753.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15470.65 Da        Isoelectric Point: 5.7516

>NTDB_id=541749 JYG31_RS13890 WP_101861068.1 2683534..2683959(-) (nucA/comI) [Bacillus halotolerans strain MBH1]
MKRWMAMLLLAAAVFLCLLGKDMTAPQQAKGAALYDKILYFPLSRYPETGDHIRDAIAEGHSDICTIDRGGADKRREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTKVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=541749 JYG31_RS13890 WP_101861068.1 2683534..2683959(-) (nucA/comI) [Bacillus halotolerans strain MBH1]
ATGAAAAGATGGATGGCAATGCTTCTTCTGGCGGCAGCAGTTTTTCTTTGTTTGTTGGGAAAGGATATGACGGCTCCGCA
ACAGGCCAAGGGGGCTGCTTTATATGACAAAATTTTATACTTTCCGTTGTCTCGTTATCCGGAAACCGGGGATCATATAA
GAGATGCGATTGCCGAAGGACATTCTGATATATGTACAATTGATCGTGGTGGAGCGGACAAAAGGCGGGAGGAATCATTA
AAAGGAATTCCAACGAAGCCTGGCTACGATCGGGATGAATGGCCGATGGCAGTTTGTGAAGAAGGAGGCGCCGGAGCCGA
TGTCCGATATGTAACGCCTTCTGATAATCGCGGCGCCGGTTCATGGGTAGGAAATCAAATGAGCAGTTATCCAGATGGCA
CCAAAGTGTTGTTTATTGTTCAGTGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.484

87.943

0.532