Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   JYG31_RS13640 Genome accession   NZ_CP070976
Coordinates   2639966..2640733 (-) Length   255 a.a.
NCBI ID   WP_213417747.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2634966..2645733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS13620 (JYG31_13620) - 2635140..2635952 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  JYG31_RS13625 (JYG31_13625) ccpN 2635978..2636616 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  JYG31_RS13630 (JYG31_13630) glyS 2636750..2638789 (-) 2040 WP_213417746.1 glycine--tRNA ligase subunit beta -
  JYG31_RS13635 (JYG31_13635) glyQ 2638782..2639669 (-) 888 WP_010334976.1 glycine--tRNA ligase subunit alpha -
  JYG31_RS13640 (JYG31_13640) recO 2639966..2640733 (-) 768 WP_213417747.1 DNA repair protein RecO Machinery gene
  JYG31_RS13645 (JYG31_13645) - 2640770..2640913 (-) 144 WP_024122087.1 YqzL family protein -
  JYG31_RS13650 (JYG31_13650) era 2641057..2641962 (-) 906 WP_010334979.1 GTPase Era -
  JYG31_RS13655 (JYG31_13655) cdd 2641943..2642353 (-) 411 WP_024122088.1 cytidine deaminase -
  JYG31_RS13660 (JYG31_13660) - 2642467..2642844 (-) 378 WP_024122089.1 diacylglycerol kinase family protein -
  JYG31_RS13665 (JYG31_13665) ybeY 2642825..2643298 (-) 474 WP_010334982.1 rRNA maturation RNase YbeY -
  JYG31_RS13670 (JYG31_13670) pgpH 2643299..2645434 (-) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29337.02 Da        Isoelectric Point: 8.3105

>NTDB_id=541745 JYG31_RS13640 WP_213417747.1 2639966..2640733(-) (recO) [Bacillus halotolerans strain MBH1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKTNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=541745 JYG31_RS13640 WP_213417747.1 2639966..2640733(-) (recO) [Bacillus halotolerans strain MBH1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAAAC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCCTTTAAACAGCTTGACGAAGGAACAGACCCAGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTATCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.118

100

0.941