Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JYG31_RS12125 Genome accession   NZ_CP070976
Coordinates   2373046..2373666 (+) Length   206 a.a.
NCBI ID   WP_024121833.1    Uniprot ID   A0A9Q6A9A0
Organism   Bacillus halotolerans strain MBH1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2368046..2378666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS12085 (JYG31_12085) - 2369184..2369690 (-) 507 WP_024121826.1 PTS glucose transporter subunit IIA -
  JYG31_RS12090 (JYG31_12090) - 2369827..2370246 (+) 420 WP_213417697.1 Hsp20/alpha crystallin family protein -
  JYG31_RS12095 (JYG31_12095) - 2370268..2370642 (-) 375 WP_024121828.1 YppG family protein -
  JYG31_RS12100 (JYG31_12100) - 2370830..2371018 (+) 189 WP_101864425.1 YppF family protein -
  JYG31_RS12105 (JYG31_12105) - 2371053..2371424 (-) 372 WP_024121830.1 YppE family protein -
  JYG31_RS12110 (JYG31_12110) - 2371470..2371715 (-) 246 WP_095713163.1 DUF5446 family protein -
  JYG31_RS12115 (JYG31_12115) sspM 2371913..2372017 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  JYG31_RS12120 (JYG31_12120) - 2372043..2373005 (-) 963 WP_213417698.1 DUF2515 domain-containing protein -
  JYG31_RS12125 (JYG31_12125) recU 2373046..2373666 (+) 621 WP_024121833.1 Holliday junction resolvase RecU Machinery gene
  JYG31_RS12130 (JYG31_12130) - 2373688..2376432 (+) 2745 WP_213417699.1 PBP1A family penicillin-binding protein -
  JYG31_RS12135 (JYG31_12135) - 2376505..2376999 (-) 495 WP_101860380.1 YpoC family protein -
  JYG31_RS12140 (JYG31_12140) nth 2376996..2377655 (-) 660 WP_010334708.1 endonuclease III -
  JYG31_RS12145 (JYG31_12145) dnaD 2377674..2378372 (-) 699 WP_095713168.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23934.13 Da        Isoelectric Point: 9.7224

>NTDB_id=541733 JYG31_RS12125 WP_024121833.1 2373046..2373666(+) (recU) [Bacillus halotolerans strain MBH1]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFGQVYFLEADKLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=541733 JYG31_RS12125 WP_024121833.1 2373046..2373666(+) (recU) [Bacillus halotolerans strain MBH1]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCCGATAAGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCCATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.087

100

0.971