Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   JYG31_RS10410 Genome accession   NZ_CP070976
Coordinates   2107582..2108712 (+) Length   376 a.a.
NCBI ID   WP_213418695.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2104142..2115150 2107582..2108712 within 0


Gene organization within MGE regions


Location: 2104142..2115150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS10375 (JYG31_10375) - 2104142..2104675 (-) 534 WP_101861424.1 N-acetyltransferase -
  JYG31_RS10380 (JYG31_10380) - 2104758..2105165 (-) 408 WP_213418694.1 UPF0715 family protein -
  JYG31_RS10385 (JYG31_10385) - 2105273..2105487 (-) 215 Protein_2015 hypothetical protein -
  JYG31_RS10390 (JYG31_10390) - 2105906..2106139 (-) 234 WP_103672503.1 AAA family ATPase -
  JYG31_RS10400 (JYG31_10400) - 2106819..2107079 (+) 261 WP_081638323.1 hypothetical protein -
  JYG31_RS10405 (JYG31_10405) - 2107327..2107497 (+) 171 WP_240312863.1 hypothetical protein -
  JYG31_RS10410 (JYG31_10410) rapC 2107582..2108712 (+) 1131 WP_213418695.1 tetratricopeptide repeat protein Regulator
  JYG31_RS10415 (JYG31_10415) - 2108702..2108845 (+) 144 WP_024121692.1 hypothetical protein -
  JYG31_RS10420 (JYG31_10420) - 2108885..2109231 (-) 347 Protein_2021 UV damage repair protein UvrX -
  JYG31_RS10425 (JYG31_10425) ppsA 2109526..2112129 (-) 2604 WP_213418696.1 phosphoenolpyruvate synthase -
  JYG31_RS10430 (JYG31_10430) - 2112641..2112722 (+) 82 Protein_2023 putative holin-like toxin -
  JYG31_RS21950 - 2113383..2113643 (-) 261 WP_251191693.1 tyrosine-type recombinase/integrase -
  JYG31_RS10435 (JYG31_10435) - 2113663..2114505 (-) 843 WP_251191694.1 Arm DNA-binding domain-containing protein -
  JYG31_RS10440 (JYG31_10440) - 2114731..2115150 (-) 420 WP_024121695.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44367.12 Da        Isoelectric Point: 5.7012

>NTDB_id=541732 JYG31_RS10410 WP_213418695.1 2107582..2108712(+) (rapC) [Bacillus halotolerans strain MBH1]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEARPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKEYIRAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAETALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYETDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFQT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=541732 JYG31_RS10410 WP_213418695.1 2107582..2108712(+) (rapC) [Bacillus halotolerans strain MBH1]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGCTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGCACGTCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGCCAAACAAAACTGAAAGGTGTACTAGAATACTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGAATATATAAGAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTTGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAACAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCCCATCTTCAGAGAGCCTTAAAAGACTCAAAAGCCATAA
ACAAGCACAAACTAATTGGGGCATCTTTATATAATTTGGGGAACTGTTATTATAAAATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAGCAAGCAGTCTCATTGTACGAAACCGATAAAAGTGATCTTCTCCCTCACACGTTATTTACGCTTACACA
AATTTACTTTAAAATGAAAGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCGCAAGCCATAAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTTCAAACT
TTTTCTGTACTTAAAGATAATGTTATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAAGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455