Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JYG31_RS02010 Genome accession   NZ_CP070976
Coordinates   383286..383723 (-) Length   145 a.a.
NCBI ID   WP_024120178.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MBH1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 378286..388723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS01975 (JYG31_01975) - 378360..379121 (+) 762 WP_213418293.1 hypothetical protein -
  JYG31_RS01980 (JYG31_01980) - 379354..379689 (+) 336 WP_101863959.1 YckD family protein -
  JYG31_RS01985 (JYG31_01985) - 379826..380245 (+) 420 WP_024120173.1 MarR family transcriptional regulator -
  JYG31_RS01990 (JYG31_01990) - 380236..380574 (+) 339 WP_024120174.1 DUF3147 family protein -
  JYG31_RS01995 (JYG31_01995) - 380591..381319 (+) 729 WP_213418294.1 AAA family ATPase -
  JYG31_RS02000 (JYG31_02000) - 381392..382825 (+) 1434 WP_213418295.1 family 1 glycosylhydrolase -
  JYG31_RS02005 (JYG31_02005) nin/comJ 382861..383259 (-) 399 WP_095714428.1 competence protein ComJ Regulator
  JYG31_RS02010 (JYG31_02010) nucA/comI 383286..383723 (-) 438 WP_024120178.1 DNA-entry nuclease Machinery gene
  JYG31_RS02015 (JYG31_02015) tlpC 383909..385633 (-) 1725 WP_213418296.1 methyl-accepting chemotaxis protein TlpC -
  JYG31_RS02020 (JYG31_02020) hxlB 385746..386303 (-) 558 WP_213418297.1 6-phospho-3-hexuloisomerase -
  JYG31_RS02025 (JYG31_02025) hxlA 386309..386941 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  JYG31_RS02030 (JYG31_02030) hxlR 387173..387535 (+) 363 WP_003241118.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15973.68 Da        Isoelectric Point: 4.1966

>NTDB_id=541703 JYG31_RS02010 WP_024120178.1 383286..383723(-) (nucA/comI) [Bacillus halotolerans strain MBH1]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSDVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=541703 JYG31_RS02010 WP_024120178.1 383286..383723(-) (nucA/comI) [Bacillus halotolerans strain MBH1]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGTCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATCAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917