Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JYG31_RS00245 Genome accession   NZ_CP070976
Coordinates   44343..44633 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus halotolerans strain MBH1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39343..49633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG31_RS00205 (JYG31_00205) darA 39363..39692 (+) 330 WP_003218295.1 cyclic di-AMP receptor DarA -
  JYG31_RS00210 (JYG31_00210) - 39705..40145 (+) 441 WP_024123606.1 YaaR family protein -
  JYG31_RS00215 (JYG31_00215) holB 40157..41146 (+) 990 WP_095714727.1 DNA polymerase III subunit delta' -
  JYG31_RS00220 (JYG31_00220) ricT 41149..41976 (+) 828 WP_010332686.1 competence/sporulation regulator complex protein RicT -
  JYG31_RS00225 (JYG31_00225) yabA 41991..42350 (+) 360 WP_010332687.1 replication initiation-control protein YabA -
  JYG31_RS00230 (JYG31_00230) - 42411..43154 (+) 744 WP_069487697.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JYG31_RS00235 (JYG31_00235) - 43141..43440 (+) 300 WP_010332689.1 GIY-YIG nuclease family protein -
  JYG31_RS00240 (JYG31_00240) rsmI 43415..44293 (+) 879 WP_103672539.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JYG31_RS00245 (JYG31_00245) abrB 44343..44633 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  JYG31_RS00250 (JYG31_00250) metG 45130..47124 (+) 1995 WP_024123610.1 methionine--tRNA ligase -
  JYG31_RS00255 (JYG31_00255) - 47203..47970 (+) 768 WP_069487699.1 TatD family hydrolase -
  JYG31_RS00260 (JYG31_00260) - 48216..49439 (+) 1224 WP_249746144.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=541698 JYG31_RS00245 WP_003226760.1 44343..44633(-) (abrB) [Bacillus halotolerans strain MBH1]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=541698 JYG31_RS00245 WP_003226760.1 44343..44633(-) (abrB) [Bacillus halotolerans strain MBH1]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTGATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGACGATAACCTTAAACTTGCTGGCGGCAAATTGGTACTAAGCAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1