Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LGV81_RS02980 Genome accession   NZ_CP086265
Coordinates   604134..604577 (+) Length   147 a.a.
NCBI ID   WP_071615340.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RS647     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 599134..609577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGV81_RS02955 (LGV81_02965) - 599239..600087 (-) 849 WP_020831378.1 YgcG family protein -
  LGV81_RS02960 (LGV81_02970) - 600100..600726 (-) 627 WP_016723449.1 LemA family protein -
  LGV81_RS02965 (LGV81_02975) dapA 601107..602021 (+) 915 WP_020831380.1 4-hydroxy-tetrahydrodipicolinate synthase -
  LGV81_RS02970 (LGV81_02980) hemL 602124..603425 (-) 1302 WP_020831381.1 glutamate-1-semialdehyde 2,1-aminomutase -
  LGV81_RS02975 (LGV81_02985) - 603637..603819 (+) 183 WP_003261842.1 rubredoxin -
  LGV81_RS02980 (LGV81_02990) pilG 604134..604577 (+) 444 WP_071615340.1 response regulator Regulator
  LGV81_RS02985 (LGV81_02995) pilH 604609..604977 (+) 369 WP_003269243.1 response regulator Machinery gene
  LGV81_RS02990 (LGV81_03000) - 605036..605581 (+) 546 WP_011000625.1 chemotaxis protein CheW -
  LGV81_RS02995 (LGV81_03005) - 605827..608058 (+) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 15807.37 Da        Isoelectric Point: 8.2887

>NTDB_id=541677 LGV81_RS02980 WP_071615340.1 604134..604577(+) (pilG) [Ralstonia pseudosolanacearum strain RS647]
MQSARVEQLTNSQPLASSLAGRKVLVIDDSSTIRRTAQIFLSKVDCQVVLAEDGFDALAKLGDFKPDIVFCDILMPKLDG
YLTCSLIKKSPKFHATPVVMLSSRDGVFDRARGKLVGAVDHLAKPFSREALLEAVQAHLPAAAGAAQ

Nucleotide


Download         Length: 444 bp        

>NTDB_id=541677 LGV81_RS02980 WP_071615340.1 604134..604577(+) (pilG) [Ralstonia pseudosolanacearum strain RS647]
ATGCAATCCGCGCGGGTGGAACAACTGACCAATTCCCAACCGCTGGCGAGTTCGCTTGCCGGCCGTAAAGTGCTGGTGAT
CGACGATTCCAGTACCATCCGCCGTACCGCGCAGATTTTCCTGTCCAAGGTCGATTGCCAGGTCGTGCTGGCCGAAGACG
GGTTCGATGCGCTGGCCAAGCTGGGTGACTTCAAGCCGGACATCGTCTTTTGCGACATCCTGATGCCCAAGCTGGACGGT
TACCTGACCTGCTCACTGATCAAGAAAAGCCCGAAGTTTCATGCCACGCCCGTGGTCATGCTGTCGTCGCGCGACGGGGT
GTTCGACCGTGCGCGCGGCAAGCTGGTCGGGGCGGTGGACCACCTTGCCAAGCCTTTCTCGCGGGAAGCGCTGCTGGAGG
CGGTCCAGGCGCATCTGCCGGCAGCCGCTGGCGCCGCGCAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(24-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

54.622

80.952

0.442