Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JRJ22_RS26385 Genome accession   NZ_CP070969
Coordinates   5650358..5651725 (-) Length   455 a.a.
NCBI ID   WP_054943948.1    Uniprot ID   -
Organism   Paenibacillus tianjinensis strain TB2019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5645358..5656725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JRJ22_RS26355 (JRJ22_26350) ispF 5645391..5645879 (-) 489 WP_206102174.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JRJ22_RS26360 (JRJ22_26355) ispD 5645883..5646575 (-) 693 WP_206102175.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JRJ22_RS26365 (JRJ22_26360) - 5646673..5647761 (-) 1089 WP_206102176.1 PIN/TRAM domain-containing protein -
  JRJ22_RS26370 (JRJ22_26365) - 5647974..5648369 (+) 396 WP_054943951.1 hypothetical protein -
  JRJ22_RS26375 (JRJ22_26370) pssA 5648465..5649202 (-) 738 WP_054943950.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  JRJ22_RS26380 (JRJ22_26375) disA 5649268..5650344 (-) 1077 WP_206102177.1 DNA integrity scanning diadenylate cyclase DisA -
  JRJ22_RS26385 (JRJ22_26380) radA 5650358..5651725 (-) 1368 WP_054943948.1 DNA repair protein RadA Machinery gene
  JRJ22_RS26390 (JRJ22_26385) clpC 5651944..5654415 (-) 2472 WP_206102178.1 ATP-dependent protease ATP-binding subunit ClpC -
  JRJ22_RS26395 (JRJ22_26390) - 5654452..5655516 (-) 1065 WP_206102179.1 protein arginine kinase -
  JRJ22_RS26400 (JRJ22_26395) - 5655545..5656069 (-) 525 WP_206102180.1 UvrB/UvrC motif-containing protein -
  JRJ22_RS26405 (JRJ22_26400) - 5656098..5656559 (-) 462 WP_054943944.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49738.61 Da        Isoelectric Point: 6.7588

>NTDB_id=541646 JRJ22_RS26385 WP_054943948.1 5650358..5651725(-) (radA) [Paenibacillus tianjinensis strain TB2019]
MAKPKTKFFCTDCGYESPKWFGKCPGCQAWNTMVEETESVVKTQGMNAPIFQSKEKAQSIINIESDKEPRILTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEA
IEHIQPQFLVIDSIQTVFMPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEIGLTEVENPSELFLSERPLGVAGSAVVASMEGTRPVLVELQALVAATHFPS
PRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAIDLAVAVSIASSFRDISTKPYDVFFGEVGLTGE
VRGVSRAETRVKEAAKLGFRRVIMPEKSMKGWKHPQDIQIIGVSTVADALKVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=541646 JRJ22_RS26385 WP_054943948.1 5650358..5651725(-) (radA) [Paenibacillus tianjinensis strain TB2019]
ATGGCTAAACCAAAAACTAAATTTTTCTGTACCGACTGCGGCTACGAATCCCCAAAATGGTTCGGCAAATGCCCGGGCTG
CCAGGCATGGAACACCATGGTGGAAGAAACGGAAAGCGTAGTCAAAACTCAAGGAATGAATGCACCTATTTTTCAGAGTA
AAGAAAAGGCGCAATCGATCATAAATATAGAGAGTGACAAAGAGCCCCGTATCTTGACAGGCATTGGAGAACTTAACCGT
GTGCTCGGCGGAGGCATCGTACCAGGATCCCTGGTGCTGGTCGGTGGCGATCCCGGAATCGGCAAATCAACCCTCCTGTT
GCAGACCTCGCATGCATTGACGACCCAAGGATTGCGTGTACTGTATATCTCGGGAGAAGAATCGGTGCGCCAGACCAAGC
TCCGTGCCGACCGCCTCGGGGCGTTGTCTGCAGAACTGTATGTGCTGTGTGAGACGAACATGGAGAGCATTGAAGAGGCA
ATTGAGCATATTCAGCCACAGTTCCTCGTAATTGACTCCATTCAGACCGTATTTATGCCGGAAGTGACGAGCGCTCCGGG
GAGTGTGACGCAGGTCCGGGAATGTACGACAAGATTTATGCGCATCGCCAAAATCCGCGGTATTGCTACAGTGCTTGTAG
GCCATGTTACCAAAGAGGGAGCCATAGCCGGGCCGCGGATGCTGGAACATATGGTGGACTGTGTGCTGTATTTCGAAGGG
GAACGTCATCATACTTACCGACTGCTGCGTGCGGTGAAGAACCGCTTTGGTTCTACCAATGAGATCGGGATCTTCGAGAT
GGGCGAGATCGGTCTTACGGAAGTGGAGAATCCTTCAGAGCTATTCCTGTCAGAGCGCCCGCTGGGTGTAGCCGGCTCTG
CTGTTGTAGCAAGCATGGAGGGAACAAGACCGGTGCTGGTCGAGCTTCAGGCACTTGTTGCAGCCACTCATTTCCCTTCT
CCGCGGCGGATGTGCACAGGGATGGATCATCAGCGCATGGCGCTTATTATTGCTGTACTTGAGAAACGGATGGGCATGTT
CCTGCAGAATCAGGATGCCTACCTCAATGTTGCCGGCGGTGTGAAGCTGGATGAACCGGCCATCGACCTGGCGGTTGCGG
TCAGCATTGCCTCAAGCTTTCGTGATATATCCACAAAACCCTATGATGTCTTCTTTGGCGAGGTTGGACTTACCGGTGAG
GTCAGGGGCGTCTCACGCGCAGAAACGCGGGTCAAGGAGGCGGCAAAGCTTGGCTTCAGAAGGGTAATTATGCCCGAGAA
GAGCATGAAAGGCTGGAAGCATCCGCAGGATATCCAGATTATTGGCGTCAGCACCGTAGCAGATGCATTAAAGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(76-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.659
  radA Streptococcus mitis NCTC 12261

58.758

99.121

0.582
  radA Streptococcus pneumoniae Rx1

58.758

99.121

0.582
  radA Streptococcus pneumoniae D39

58.758

99.121

0.582
  radA Streptococcus pneumoniae R6

58.758

99.121

0.582
  radA Streptococcus pneumoniae TIGR4

58.758

99.121

0.582
  radA Streptococcus mitis SK321

58.758

99.121

0.582