Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LMH79_RS09320 Genome accession   NZ_CP086259
Coordinates   1954694..1956121 (-) Length   475 a.a.
NCBI ID   WP_170903133.1    Uniprot ID   -
Organism   Escherichia coli strain SCPM-O-B-9427     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1949694..1961121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH79_RS09290 (LMH79_09295) yeeZ 1949749..1950573 (+) 825 WP_170903132.1 SDR family oxidoreductase -
  LMH79_RS09295 (LMH79_09300) yeeY 1950619..1951548 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  LMH79_RS09300 (LMH79_09305) yoeI 1951763..1951825 (+) 63 WP_010723108.1 membrane protein YoeI -
  LMH79_RS09305 (LMH79_09310) plaP 1951815..1953173 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  LMH79_RS09310 (LMH79_09315) tsuA 1953352..1954410 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  LMH79_RS09315 (LMH79_09320) tsuB 1954424..1954651 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  LMH79_RS09320 (LMH79_09325) sbcB 1954694..1956121 (-) 1428 WP_170903133.1 exodeoxyribonuclease I Machinery gene
  LMH79_RS09325 (LMH79_09330) dacD 1956330..1957496 (+) 1167 WP_000830155.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  LMH79_RS09330 (LMH79_09335) sbmC 1957615..1958088 (+) 474 WP_170903134.1 DNA gyrase inhibitor SbmC -
  LMH79_RS09335 (LMH79_09340) - 1958286..1958837 (+) 552 Protein_1836 FUSC family protein -
  LMH79_RS09340 (LMH79_09345) - 1959030..1960010 (+) 981 WP_228355582.1 IS110-like element IS621 family transposase -
  LMH79_RS09345 (LMH79_09350) - 1960108..1960623 (+) 516 Protein_1838 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54444.77 Da        Isoelectric Point: 5.4699

>NTDB_id=541609 LMH79_RS09320 WP_170903133.1 1954694..1956121(-) (sbcB) [Escherichia coli strain SCPM-O-B-9427]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFCDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=541609 LMH79_RS09320 WP_170903133.1 1954694..1956121(-) (sbcB) [Escherichia coli strain SCPM-O-B-9427]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCTGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581