Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JX000_RS04055 Genome accession   NZ_CP070964
Coordinates   828783..829499 (-) Length   238 a.a.
NCBI ID   WP_002466277.1    Uniprot ID   -
Organism   Staphylococcus sp. SB1-57     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 823783..834499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JX000_RS04035 (JX000_04035) - 824671..824895 (+) 225 WP_002452012.1 sulfurtransferase TusA family protein -
  JX000_RS04040 (JX000_04040) - 825035..825985 (+) 951 WP_206140914.1 LacI family DNA-binding transcriptional regulator -
  JX000_RS04045 (JX000_04045) - 826287..827771 (+) 1485 WP_002452010.1 sucrose-6-phosphate hydrolase -
  JX000_RS04050 (JX000_04050) - 827768..828724 (+) 957 WP_206140915.1 carbohydrate kinase -
  JX000_RS04055 (JX000_04055) agrA 828783..829499 (-) 717 WP_002466277.1 LytTR family DNA-binding domain-containing protein Regulator
  JX000_RS04060 (JX000_04060) - 829512..830801 (-) 1290 WP_145506672.1 GHKL domain-containing protein -
  JX000_RS04065 (JX000_04065) - 830824..830964 (-) 141 WP_124227772.1 cyclic lactone autoinducer peptide -
  JX000_RS04070 (JX000_04070) - 830969..831532 (-) 564 WP_002451572.1 accessory gene regulator AgrB -
  JX000_RS04075 (JX000_04075) - 831849..831926 (+) 78 WP_015364840.1 delta-lysin family phenol-soluble modulin -
  JX000_RS04080 (JX000_04080) - 831993..832070 (+) 78 WP_015364841.1 delta-lysin family phenol-soluble modulin -
  JX000_RS04085 (JX000_04085) - 832484..833269 (-) 786 WP_002451573.1 carbon-nitrogen family hydrolase -
  JX000_RS04090 (JX000_04090) - 833386..834012 (-) 627 WP_002451574.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27897.92 Da        Isoelectric Point: 5.9175

>NTDB_id=541595 JX000_RS04055 WP_002466277.1 828783..829499(-) (agrA) [Staphylococcus sp. SB1-57]
MKIFICEDDPKQRENMASIIKNYIMIEEKPMELALATDDPYEVLEQSKNMNDIGCYFLDIQLEADINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSSKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVINRRNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=541595 JX000_RS04055 WP_002466277.1 828783..829499(-) (agrA) [Staphylococcus sp. SB1-57]
ATGAAAATATTCATTTGCGAAGATGATCCAAAACAACGAGAAAATATGGCTTCCATTATTAAAAATTACATTATGATTGA
AGAGAAGCCTATGGAGCTTGCTCTCGCAACTGATGATCCTTATGAAGTGCTTGAGCAATCCAAAAATATGAATGACATCG
GTTGTTATTTCTTAGATATACAACTTGAAGCAGATATAAATGGTATTAAATTAGGTAGTGAAATTCGAAAACATGATCCT
GTAGGTAACATCATTTTTGTAACAAGCCATAGTGAATTAACGTATCTCACTTTCGTTTATAAAGTCGCTGCAATGGATTT
TATATTCAAAGATGATCCTGCAGAACTGAAAACACGTATTATCGATTGTTTAGAAACAGCTCACACAAGACTCAAATTAT
TATCCAAAGAAAGTAATGTAGAAACAATTGAGTTGAAACGTGGTAGTAATTCAGTTTATGTACAATATGACGATATCATG
TTTTTTGAATCATCTAGTAAATCACATCGTTTAATTGCACATTTAGATAATAGACAAATCGAATTTTATGGTAACCTCAA
AGAATTAAGTCAATTAGATGACCGTTTCTTTAGATGTCATAATAGCTTTGTGATTAATCGGAGAAATATTGAATCCATTG
ATTCTAAAGAGCGTATTGTCTATTTTAAAAATAAAGAACACTGTTATGCATCTGTTCGTAATGTCAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

93.697

100

0.937