Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JW907_RS01660 Genome accession   NZ_CP070960
Coordinates   358961..360352 (+) Length   463 a.a.
NCBI ID   WP_206200794.1    Uniprot ID   -
Organism   Thermosynechococcus sp. TA-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 353961..365352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW907_RS01630 (JW907_01630) - 355231..355881 (+) 651 WP_206200791.1 phosphorylase -
  JW907_RS01635 (JW907_01635) - 355910..357322 (+) 1413 WP_225901616.1 serine/threonine-protein kinase -
  JW907_RS01640 (JW907_01640) - 357288..357785 (-) 498 WP_206200793.1 GNAT family N-acetyltransferase -
  JW907_RS01645 (JW907_01645) secG 357797..358030 (-) 234 WP_149821094.1 preprotein translocase subunit SecG -
  JW907_RS01650 (JW907_01650) - 358140..358460 (+) 321 WP_149821092.1 phasin family protein -
  JW907_RS01655 (JW907_01655) - 358454..358942 (+) 489 WP_149821090.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  JW907_RS01660 (JW907_01660) radA 358961..360352 (+) 1392 WP_206200794.1 DNA repair protein RadA Machinery gene
  JW907_RS01665 (JW907_01665) cobU 360356..360922 (-) 567 WP_206200795.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  JW907_RS01670 (JW907_01670) - 360939..361769 (-) 831 WP_206200796.1 ABC transporter permease -
  JW907_RS01675 (JW907_01675) argF 361777..362691 (-) 915 WP_206200797.1 ornithine carbamoyltransferase -
  JW907_RS01680 (JW907_01680) plsY 362833..363468 (-) 636 WP_206200798.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  JW907_RS01685 (JW907_01685) - 363479..364447 (-) 969 WP_206200799.1 DUF3086 domain-containing protein -
  JW907_RS01690 (JW907_01690) - 364437..364841 (-) 405 WP_206200800.1 DUF3119 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49605.23 Da        Isoelectric Point: 7.6433

>NTDB_id=541546 JW907_RS01660 WP_206200794.1 358961..360352(+) (radA) [Thermosynechococcus sp. TA-1]
MPKAKVLYICRECGAESVQYFGRCPNCGQWNTLDEQVVTPVETAARPTTPRKSTTPHPRSAKALGEISEQTQSRSASGFA
ELDRVLGGGIVVGSLVLVAGEPGIGKSTLLLQMAATLGQQQRVLYVCAEESVQQVKLRSQRLGIAASPSLYLLAETNLEV
ILQELTHLQPHLAIIDSIQAVYLPQLTAAPGSVSQVREGTAALMRLAKREQMSLFIVGHVTKEGAIAGPKVLEHLVDTVL
YFEGDRFASHRLVRAVKNRFGASQEIGVFEMGAQGLAEVTNPSALFLGDREPTPGTATIVACEGTRPLVVELQSLVSPTS
YPSPRRTATGIEYNRFLQILAVLEKRLGVPLSKLDAYVASAGGLNVAEPAADLGVAVAVVASFRDRWVHPQTVIIGEVGL
GGQVRAVSQLEVRLREALKLGFRRAIIPENQACAIAGLEIYPVRRVTDAIVAALAPMTTEESP

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=541546 JW907_RS01660 WP_206200794.1 358961..360352(+) (radA) [Thermosynechococcus sp. TA-1]
ATGCCCAAGGCCAAGGTACTGTATATCTGCCGCGAGTGTGGTGCCGAGTCTGTGCAATACTTTGGTCGCTGTCCCAACTG
TGGTCAGTGGAATACCCTTGATGAGCAGGTGGTTACCCCTGTAGAGACCGCTGCTCGACCCACAACCCCCCGAAAATCGA
CCACTCCCCACCCCCGCAGTGCCAAGGCCCTAGGAGAGATTAGCGAACAGACACAGAGCCGTTCTGCCTCCGGATTTGCC
GAGTTGGATCGGGTTTTGGGAGGGGGGATTGTGGTTGGCTCCCTCGTGTTGGTGGCCGGCGAACCGGGAATTGGCAAGTC
CACGCTTTTGTTGCAGATGGCAGCCACCTTAGGGCAACAGCAGCGGGTGCTCTATGTCTGTGCAGAGGAATCGGTGCAGC
AGGTGAAATTGCGATCGCAACGACTGGGCATTGCCGCCTCCCCCTCGCTCTATCTTTTGGCGGAGACGAATTTGGAGGTG
ATCCTGCAGGAGCTGACCCATCTGCAACCCCATCTGGCGATTATTGATAGCATCCAAGCGGTGTATCTGCCCCAATTGAC
GGCTGCCCCCGGCTCGGTGTCTCAGGTTCGTGAGGGCACAGCCGCCTTGATGCGCTTAGCCAAGCGGGAGCAGATGAGTC
TCTTTATTGTGGGGCATGTTACAAAGGAGGGGGCGATCGCCGGTCCGAAGGTGCTGGAACATTTGGTGGATACCGTGCTC
TACTTTGAGGGCGATCGCTTTGCCAGTCACCGCCTCGTACGCGCTGTCAAAAACCGCTTTGGTGCTAGTCAAGAAATTGG
CGTTTTTGAAATGGGCGCGCAGGGCTTAGCCGAGGTCACAAATCCTTCGGCGCTGTTTTTGGGCGATCGCGAGCCAACCC
CCGGTACCGCCACCATTGTGGCCTGTGAAGGCACCCGTCCGCTTGTGGTTGAGTTGCAAAGTTTAGTTAGCCCCACCAGT
TATCCCTCTCCACGCCGCACGGCCACGGGCATTGAGTACAATCGCTTTTTGCAAATTCTCGCCGTCCTAGAAAAACGCCT
AGGGGTGCCCCTCTCGAAGCTAGATGCCTATGTGGCGTCCGCTGGCGGGCTGAATGTGGCGGAACCCGCTGCTGATCTGG
GGGTGGCAGTGGCTGTTGTGGCTAGTTTTCGCGATCGCTGGGTGCACCCCCAAACGGTGATCATTGGCGAAGTGGGCTTA
GGGGGGCAAGTGCGAGCCGTCTCCCAGTTAGAAGTACGGCTGCGGGAGGCGCTGAAGTTGGGATTTCGCCGTGCCATTAT
TCCCGAAAACCAAGCCTGTGCGATCGCGGGGCTAGAGATTTATCCTGTACGTCGTGTCACCGATGCCATTGTGGCTGCCC
TTGCCCCTATGACCACTGAGGAATCCCCCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-224)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.348

99.352

0.49
  radA Streptococcus pneumoniae Rx1

49.541

94.168

0.467
  radA Streptococcus pneumoniae D39

49.541

94.168

0.467
  radA Streptococcus pneumoniae R6

49.541

94.168

0.467
  radA Streptococcus pneumoniae TIGR4

49.541

94.168

0.467
  radA Streptococcus mitis NCTC 12261

49.541

94.168

0.467
  radA Streptococcus mitis SK321

49.541

94.168

0.467