Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JYG65_RS13115 Genome accession   NZ_CP070954
Coordinates   2733869..2734498 (-) Length   209 a.a.
NCBI ID   WP_000793790.1    Uniprot ID   A0A7L6ZPA1
Organism   Escherichia fergusonii strain EF44     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2728869..2739498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG65_RS13100 (JYG65_13065) helD 2729110..2731164 (-) 2055 WP_223666783.1 DNA helicase IV -
  JYG65_RS13105 (JYG65_13070) - 2731287..2731733 (+) 447 WP_002431615.1 YccF domain-containing protein -
  JYG65_RS13110 (JYG65_13075) yccS 2731753..2733906 (+) 2154 WP_223666789.1 YccS family putative transporter -
  JYG65_RS13115 (JYG65_13080) sxy/tfoX 2733869..2734498 (-) 630 WP_000793790.1 TfoX/Sxy family DNA transformation protein Regulator
  JYG65_RS13120 (JYG65_13085) sulA 2734715..2735224 (+) 510 WP_000288735.1 SOS-induced cell division inhibitor SulA -
  JYG65_RS13125 (JYG65_13090) ompA 2735581..2736636 (+) 1056 WP_024256413.1 porin OmpA -
  JYG65_RS13130 (JYG65_13095) matP 2736691..2737146 (-) 456 WP_000877154.1 macrodomain Ter protein MatP -
  JYG65_RS13135 (JYG65_13100) - 2737331..2739091 (+) 1761 WP_000156542.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24359.36 Da        Isoelectric Point: 9.5059

>NTDB_id=541518 JYG65_RS13115 WP_000793790.1 2733869..2734498(-) (sxy/tfoX) [Escherichia fergusonii strain EF44]
MKNLSYDRIYKSQEYLASLGRVNYRSLFGSYSLTISDTVFAMVADGELYLRACEQSVQYCVKHTPRWLTFMKKGRLVMLN
YYRVDESLWQDQQQLIRLSRYSLDAALKEKKSLGRKYRLRDLPNITYHLESLLNEAGIKDVSTLRILGAKMCWLRLKQMN
QHITVKILYLLEGAVQDIHEAALPVVRRQELAVWVESLTPDLALLASFD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=541518 JYG65_RS13115 WP_000793790.1 2733869..2734498(-) (sxy/tfoX) [Escherichia fergusonii strain EF44]
ATGAAAAATCTATCCTATGATCGGATCTATAAATCACAAGAATATTTAGCATCCCTGGGCAGGGTGAACTATCGGTCTCT
GTTTGGCAGTTACAGCTTAACTATCAGCGATACCGTGTTTGCGATGGTGGCTGATGGTGAGTTATATCTGCGCGCCTGTG
AACAAAGCGTCCAGTATTGCGTCAAACATACCCCCCGCTGGTTAACGTTTATGAAAAAAGGGCGGTTGGTCATGCTGAAC
TATTACCGGGTAGATGAAAGTTTGTGGCAGGACCAGCAGCAATTAATTCGCCTGTCGCGTTATTCGCTGGATGCAGCTCT
TAAAGAGAAGAAGAGCCTTGGCAGGAAGTATCGCTTAAGAGATCTGCCTAACATTACTTATCATCTTGAGTCGTTGCTCA
ATGAGGCGGGTATTAAAGATGTCAGCACGTTGCGTATTTTGGGGGCAAAAATGTGCTGGTTAAGGTTAAAGCAGATGAAT
CAGCACATTACCGTGAAAATACTCTATTTGCTGGAAGGCGCGGTGCAGGATATTCATGAAGCAGCGCTCCCGGTGGTCCG
TCGCCAGGAGCTTGCTGTATGGGTGGAGTCTCTTACGCCAGATCTGGCGTTGCTGGCGTCATTTGATTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6ZPA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.856

100

0.699