Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   JYA71_RS17325 Genome accession   NZ_CP070939
Coordinates   3688679..3689632 (-) Length   317 a.a.
NCBI ID   WP_012450393.1    Uniprot ID   A0A0L9YAX7
Organism   Clostridium botulinum strain ZJK-8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3683679..3694632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA71_RS17300 (JYA71_17160) - 3683832..3683990 (-) 159 WP_012451138.1 DUF1540 domain-containing protein -
  JYA71_RS17305 (JYA71_17165) - 3684257..3685345 (+) 1089 WP_260537432.1 PRK06851 family protein -
  JYA71_RS17310 (JYA71_17170) - 3685767..3686711 (-) 945 WP_265859190.1 siderophore ABC transporter substrate-binding protein -
  JYA71_RS17315 (JYA71_17175) - 3686987..3687742 (-) 756 WP_265859191.1 ABC transporter ATP-binding protein -
  JYA71_RS17320 (JYA71_17180) - 3687739..3688689 (-) 951 WP_260536558.1 iron chelate uptake ABC transporter family permease subunit -
  JYA71_RS17325 (JYA71_17185) ceuB 3688679..3689632 (-) 954 WP_012450393.1 ABC transporter permease Machinery gene
  JYA71_RS17330 (JYA71_17190) - 3689825..3690586 (+) 762 WP_265859192.1 helix-turn-helix domain-containing protein -
  JYA71_RS17335 (JYA71_17195) - 3690986..3692647 (-) 1662 WP_004443280.1 SulP family inorganic anion transporter -
  JYA71_RS17340 (JYA71_17200) dapA 3693082..3693954 (-) 873 WP_205448907.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34885.54 Da        Isoelectric Point: 9.7561

>NTDB_id=541463 JYA71_RS17325 WP_012450393.1 3688679..3689632(-) (ceuB) [Clostridium botulinum strain ZJK-8]
MKKIYLLILLVILSIASLFIGVSDISLSDIISLDSEKINLILIGRLPRLISIIFAGVGMSISGLIMQQISRNKFVSPTTA
GTIDFAKLGILVCMIVFPQATMMNKMLLSFTFAILGTLLFMQIQKKIKIKNIVFIPLIGMMLGKIVGSITMFFSYKYDLI
QNINSWMEGDFSLIMKGKYELLYISIPLVIIAAIYANKFTIAGMGEDFCTNLGIKYNRVVNLGLVIVALISSVVVITIGA
IPFLGIIVPNIVTMYYGDNLKNVLGLTALIGPIFLLICDILGRLIIYPYEISISLTVGVIGSVAFLYLIFRRSGHEA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=541463 JYA71_RS17325 WP_012450393.1 3688679..3689632(-) (ceuB) [Clostridium botulinum strain ZJK-8]
ATGAAAAAAATATACTTGTTAATATTGCTGGTAATATTGTCAATAGCTTCATTATTTATTGGAGTAAGTGATATATCATT
ATCAGATATTATTAGTCTAGATAGTGAAAAAATAAACCTTATATTAATTGGTAGATTGCCAAGGCTTATAAGTATAATCT
TTGCTGGAGTTGGAATGAGTATAAGCGGACTTATAATGCAACAAATAAGTAGAAATAAATTTGTTTCACCTACAACTGCT
GGAACAATAGATTTTGCTAAATTAGGAATATTAGTATGCATGATTGTATTTCCACAGGCAACTATGATGAATAAAATGCT
TTTATCATTTACATTTGCAATACTTGGAACACTGTTATTTATGCAAATACAAAAGAAAATAAAGATTAAAAATATAGTTT
TTATACCTCTTATAGGTATGATGCTTGGAAAAATAGTTGGTTCAATAACTATGTTTTTCTCTTATAAGTATGATCTTATC
CAAAATATAAATTCATGGATGGAAGGCGATTTCTCATTAATTATGAAAGGGAAATATGAACTATTATATATAAGTATACC
TCTTGTAATAATAGCAGCTATATATGCTAATAAGTTTACTATTGCTGGAATGGGAGAGGACTTTTGTACAAATCTAGGAA
TAAAGTATAATCGTGTTGTTAATTTAGGATTAGTAATAGTAGCATTAATTTCATCAGTTGTAGTTATAACAATAGGGGCA
ATACCATTTTTAGGTATTATAGTTCCTAATATAGTTACTATGTATTATGGAGATAATTTAAAGAATGTATTAGGACTTAC
AGCCTTAATAGGACCTATATTTTTATTAATATGTGATATTTTAGGAAGACTTATTATTTATCCATATGAAATATCAATAA
GCTTAACAGTAGGGGTAATAGGTAGCGTAGCATTCCTTTACTTAATATTTAGGAGGTCTGGTCATGAGGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L9YAX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.839

98.107

0.489