Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JR883_RS14075 Genome accession   NZ_CP070930
Coordinates   2912611..2913240 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 30COLEC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2907611..2918240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR883_RS14060 (JR883_14060) helD 2907853..2909907 (-) 2055 WP_012304887.1 DNA helicase IV -
  JR883_RS14065 (JR883_14065) yccF 2910030..2910476 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JR883_RS14070 (JR883_14070) yccS 2910486..2912648 (+) 2163 WP_074478097.1 YccS family putative transporter -
  JR883_RS14075 (JR883_14075) sxy/tfoX 2912611..2913240 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JR883_RS14080 (JR883_14080) sulA 2913459..2913968 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JR883_RS14085 (JR883_14085) ompA 2914325..2915365 (+) 1041 WP_000750416.1 porin OmpA -
  JR883_RS14090 (JR883_14090) matP 2915441..2915893 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JR883_RS14095 (JR883_14095) ycbZ 2916079..2917839 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=541414 JR883_RS14075 WP_000839153.1 2912611..2913240(-) (sxy/tfoX) [Escherichia coli strain 30COLEC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=541414 JR883_RS14075 WP_000839153.1 2912611..2913240(-) (sxy/tfoX) [Escherichia coli strain 30COLEC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1