Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   IAK_RS0117375 Genome accession   NZ_AFXK01000001
Coordinates   3676052..3676408 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa 213BR     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3671052..3681408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAK_RS0117350 - 3671418..3672050 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  IAK_RS0117355 - 3672115..3673011 (-) 897 WP_003091113.1 radical SAM protein -
  IAK_RS0117360 - 3673178..3673816 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  IAK_RS0117365 - 3673902..3675035 (+) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  IAK_RS0117370 - 3675261..3676037 (-) 777 WP_003091117.1 TatD family hydrolase -
  IAK_RS0117375 pilZ 3676052..3676408 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  IAK_RS0117380 - 3676442..3677428 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  IAK_RS0117385 tmk 3677421..3678053 (-) 633 WP_003091125.1 dTMP kinase -
  IAK_RS0117390 mltG 3678079..3679128 (-) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  IAK_RS0117395 pabC 3679134..3679949 (-) 816 WP_003113994.1 aminodeoxychorismate lyase -
  IAK_RS0117400 fabF 3679949..3681193 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=54140 IAK_RS0117375 WP_003091119.1 3676052..3676408(-) (pilZ) [Pseudomonas aeruginosa 213BR]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=54140 IAK_RS0117375 WP_003091119.1 3676052..3676408(-) (pilZ) [Pseudomonas aeruginosa 213BR]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449

Multiple sequence alignment