Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JR909_RS14175 Genome accession   NZ_CP070920
Coordinates   2909528..2910157 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 40EC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2904528..2915157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR909_RS14160 (JR909_14160) helD 2904770..2906824 (-) 2055 WP_000420536.1 DNA helicase IV -
  JR909_RS14165 (JR909_14165) yccF 2906947..2907393 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JR909_RS14170 (JR909_14170) yccS 2907403..2909565 (+) 2163 WP_000875019.1 YccS family putative transporter -
  JR909_RS14175 (JR909_14175) sxy/tfoX 2909528..2910157 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JR909_RS14180 (JR909_14180) sulA 2910376..2910885 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JR909_RS14185 (JR909_14185) ompA 2911242..2912294 (+) 1053 WP_000750419.1 porin OmpA -
  JR909_RS14190 (JR909_14190) matP 2912369..2912821 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  JR909_RS14195 (JR909_14195) ycbZ 2913007..2914767 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=541392 JR909_RS14175 WP_000839153.1 2909528..2910157(-) (sxy/tfoX) [Escherichia coli strain 40EC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=541392 JR909_RS14175 WP_000839153.1 2909528..2910157(-) (sxy/tfoX) [Escherichia coli strain 40EC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1