Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JR892_RS13800 Genome accession   NZ_CP070914
Coordinates   2856576..2857205 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 65COLEC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2851576..2862205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR892_RS13785 (JR892_13785) helD 2851818..2853872 (-) 2055 WP_000420536.1 DNA helicase IV -
  JR892_RS13790 (JR892_13790) yccF 2853995..2854441 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JR892_RS13795 (JR892_13795) yccS 2854451..2856613 (+) 2163 WP_000875019.1 YccS family putative transporter -
  JR892_RS13800 (JR892_13800) sxy/tfoX 2856576..2857205 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JR892_RS13805 (JR892_13805) sulA 2857424..2857933 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JR892_RS13810 (JR892_13810) ompA 2858290..2859342 (+) 1053 WP_000750419.1 porin OmpA -
  JR892_RS13815 (JR892_13815) matP 2859417..2859869 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  JR892_RS13820 (JR892_13820) ycbZ 2860055..2861815 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=541370 JR892_RS13800 WP_000839153.1 2856576..2857205(-) (sxy/tfoX) [Escherichia coli strain 65COLEC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=541370 JR892_RS13800 WP_000839153.1 2856576..2857205(-) (sxy/tfoX) [Escherichia coli strain 65COLEC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1