Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JR901_RS14485 Genome accession   NZ_CP070906
Coordinates   3027243..3027872 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 88COLEC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3022243..3032872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR901_RS14470 (JR901_14470) helD 3022485..3024539 (-) 2055 WP_000420536.1 DNA helicase IV -
  JR901_RS14475 (JR901_14475) yccF 3024662..3025108 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JR901_RS14480 (JR901_14480) yccS 3025118..3027280 (+) 2163 WP_000323868.1 YccS family putative transporter -
  JR901_RS14485 (JR901_14485) sxy/tfoX 3027243..3027872 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JR901_RS14490 (JR901_14490) sulA 3028091..3028600 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  JR901_RS14495 (JR901_14495) ompA 3028957..3030012 (+) 1056 WP_000750414.1 porin OmpA -
  JR901_RS14500 (JR901_14500) matP 3030090..3030542 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  JR901_RS14505 (JR901_14505) ycbZ 3030728..3032488 (+) 1761 WP_021556661.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=541348 JR901_RS14485 WP_000839153.1 3027243..3027872(-) (sxy/tfoX) [Escherichia coli strain 88COLEC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=541348 JR901_RS14485 WP_000839153.1 3027243..3027872(-) (sxy/tfoX) [Escherichia coli strain 88COLEC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1