Detailed information NTG0541206

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: JW886_RS03725
• Genome accession: NZ_CP070872
• Coordinates: 730938..733388 (+)
• Length: 816 a.a.
• NCBI ID: WP_075524513.1
• Uniprot ID: A0AA45KIF9
• Organism: Lactococcus taiwanensis strain K_LL004
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 725938..738388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JW886_RS03700 (JW886_03700)	-	726494..727006 (+)	513	WP_075524476.1	adenine phosphoribosyltransferase	-
JW886_RS03705 (JW886_03705)	rpoE	727278..727841 (+)	564	WP_205872338.1	DNA-directed RNA polymerase subunit delta	-
JW886_RS03710 (JW886_03710)	mltG	727982..729631 (+)	1650	WP_205872339.1	endolytic transglycosylase MltG	-
JW886_RS03715 (JW886_03715)	greA	729801..730271 (+)	471	WP_075524479.1	transcription elongation factor GreA	-
JW886_RS03720 (JW886_03720)	-	730493..730948 (+)	456	WP_075524480.1	CtsR family transcriptional regulator	-
JW886_RS03725 (JW886_03725)	clpC	730938..733388 (+)	2451	WP_075524513.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
JW886_RS03730 (JW886_03730)	hpf	733506..734063 (+)	558	WP_075524481.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
JW886_RS03735 (JW886_03735)	eno	734251..735552 (+)	1302	WP_075524482.1	surface-displayed alpha-enolase	-
JW886_RS03740 (JW886_03740)	-	735667..736338 (-)	672	WP_205872340.1	ABC transporter ATP-binding protein	-
JW886_RS03745 (JW886_03745)	-	736341..737414 (-)	1074	WP_205872341.1	ABC transporter permease	-
JW886_RS03750 (JW886_03750)	-	737426..737995 (-)	570	WP_205872342.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 90330.67 Da
• Isoelectric Point: 6.0699

>NTDB_id=541206 JW886_RS03725 WP_075524513.1 730938..733388(+) (clpC) [Lactococcus taiwanensis strain K_LL004]
MKFENIEYTPTIERILEKAAEYAYQYEYGAIESAHLLAAMASIPGSIAYSVLGAMKVDASDLLIDLEDLSSHVSSERDEL
VFSPRAEEVMTLAQLLAKHNGSQLVGTEHVLYALLQVEDGFALQLLKLQKINIVSVRKELEKRTGLKTPEVKKAVTPMSK
RNLAKRVSATTNTPTLDSVSSDLTEEARAGKLDPMIGREAEIERLVHILSRRTKNNPVLVGEPGVGKSAIIEGLAQRIVN
GEVPVGLMNSRIMALNMATVVAGTKFRGEFEDRLTAIVEEVSNDPEVIIFIDELHTIIGAGGGMDSVNDAANILKPALAR
GNFQMIGATTYNEYQKYIEKDEALERRLARVNVEEPTPDEAIAILEGLREKFETYHHVQFTDEAIRSAVMLSVRYMTSRK
LPDKAIDLLDEAAASVKISIKNQQAKRLELEKAVQEAQKDLSEAVVHLDITASREKEALVQKATKALNRFSVRSEKPQKV
TDQAVINVASTLTGVPISQMTKTESERLINLEKELHKRVVGQDEAISAVARAIRRARSGVADSRRPMGSFMFLGPTGVGK
TELAKALADSVFGSEDNMIRVDMSEFMEKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSVVLLDEVEKAHPDVFNIML
QILDDGFVTDTKGRKVDFRNTIIIMTSNLGATALRDDKTVGFGAKNISGDYAAMKARILEELKRHYRPEFLNRIDETIVF
HPLTAEEIEQIVKIMSKSLINRLAEQNIHIKLTPAAVKLLAEVGFDPEYGARPLRKALQREVEDLLSEQLLSNEIKAGDQ
LSIGTSNKKIKITQII

Nucleotide

• Length: 2451 bp

>NTDB_id=541206 JW886_RS03725 WP_075524513.1 730938..733388(+) (clpC) [Lactococcus taiwanensis strain K_LL004]
ATGAAATTTGAAAATATCGAGTATACCCCAACGATTGAAAGAATATTAGAAAAGGCAGCAGAATATGCCTATCAATATGA
GTATGGCGCGATTGAAAGTGCGCATCTTTTAGCTGCAATGGCCTCCATTCCAGGCTCAATTGCTTACAGTGTCTTAGGGG
CTATGAAGGTGGATGCCTCTGATTTATTAATTGACTTGGAAGACTTATCGAGTCATGTGTCCAGTGAGCGCGACGAACTT
GTTTTCTCGCCCCGTGCTGAAGAGGTAATGACTCTTGCTCAGCTCTTAGCTAAGCATAATGGCTCGCAGCTTGTTGGAAC
GGAGCATGTCCTTTACGCTCTTTTACAAGTCGAAGATGGCTTCGCACTTCAACTATTGAAATTACAAAAGATTAACATCG
TCTCTGTGCGAAAAGAACTTGAAAAACGCACAGGACTTAAAACACCAGAAGTTAAAAAGGCTGTAACTCCAATGTCTAAG
CGAAATTTAGCTAAACGTGTTTCAGCAACAACGAATACTCCTACTTTAGACTCCGTTTCATCTGATTTGACAGAAGAAGC
CCGAGCGGGAAAGTTGGATCCGATGATTGGTCGGGAGGCTGAAATTGAACGTTTAGTTCACATTTTAAGTCGTCGTACGA
AAAATAACCCTGTCTTAGTTGGAGAACCTGGGGTAGGGAAGTCAGCGATCATTGAAGGGTTAGCCCAAAGAATTGTAAAC
GGTGAAGTGCCAGTCGGTTTGATGAATAGTCGTATCATGGCACTTAATATGGCAACAGTTGTTGCAGGGACAAAATTCCG
TGGAGAGTTTGAAGACCGGTTGACAGCGATTGTCGAAGAGGTCAGCAATGATCCAGAGGTAATTATTTTTATTGATGAGC
TACATACCATTATTGGAGCAGGCGGAGGAATGGATTCGGTCAACGATGCAGCGAATATTCTCAAGCCCGCCTTGGCTCGT
GGTAACTTCCAAATGATTGGTGCGACAACTTATAATGAATATCAAAAATACATTGAAAAAGATGAAGCATTAGAACGCCG
TCTAGCTCGAGTGAATGTTGAGGAGCCTACGCCAGATGAGGCAATCGCTATCTTGGAAGGCTTACGGGAAAAATTTGAAA
CTTATCATCATGTTCAATTTACTGACGAAGCCATCAGAAGCGCCGTCATGCTCAGTGTGCGTTATATGACCAGCCGTAAG
TTGCCAGATAAAGCCATTGACCTTTTAGATGAAGCAGCAGCTTCGGTAAAAATATCAATCAAAAATCAACAAGCTAAACG
TTTAGAGTTAGAAAAAGCAGTACAAGAAGCTCAAAAAGACTTGTCAGAGGCAGTTGTTCATTTAGATATTACGGCTTCTC
GAGAAAAAGAAGCGCTTGTTCAGAAAGCAACAAAGGCTCTCAATCGTTTCTCAGTGCGCTCAGAAAAGCCACAAAAAGTT
ACTGACCAAGCGGTCATTAACGTCGCCTCTACTCTTACAGGGGTACCAATCAGCCAAATGACTAAAACTGAGAGCGAACG
CCTTATTAATCTTGAAAAAGAATTGCATAAGCGTGTAGTGGGACAAGATGAAGCGATATCAGCGGTTGCTCGTGCTATTA
GACGAGCGCGTTCAGGCGTGGCTGATAGCCGCCGTCCAATGGGTTCATTCATGTTTTTAGGTCCTACTGGGGTAGGTAAG
ACAGAACTTGCCAAAGCACTAGCTGATAGTGTTTTTGGAAGTGAGGACAATATGATCCGGGTCGATATGAGTGAGTTCAT
GGAAAAACACTCGACATCACGACTTATTGGAGCTCCTCCAGGGTATGTGGGTTACGATGAAGGAGGCCAGCTAACTGAGC
GCGTGCGTAATAAGCCTTATTCTGTTGTGCTTCTTGATGAAGTTGAAAAAGCCCATCCAGACGTCTTTAATATTATGTTG
CAAATCCTAGATGATGGCTTTGTGACCGATACAAAAGGCCGCAAAGTGGACTTCAGAAATACCATCATTATCATGACTTC
AAATTTAGGAGCAACGGCGCTTCGTGACGATAAAACAGTCGGTTTTGGTGCAAAAAACATAAGTGGTGATTATGCAGCAA
TGAAGGCACGGATTTTGGAGGAGCTAAAAAGGCATTACCGTCCCGAGTTTTTAAACCGAATTGATGAAACTATTGTCTTC
CATCCGCTTACTGCTGAAGAAATCGAGCAAATTGTGAAGATTATGAGTAAGTCTCTTATTAATCGACTTGCAGAACAAAA
TATTCACATTAAACTCACACCTGCGGCTGTTAAACTCCTTGCCGAAGTAGGATTTGATCCAGAATATGGGGCACGTCCTC
TAAGAAAAGCGCTTCAAAGGGAAGTAGAAGACCTGTTAAGTGAACAACTCCTTTCCAATGAAATTAAAGCGGGTGACCAA
CTCTCCATTGGCACCTCTAACAAAAAAATTAAAATCACTCAAATCATTTGA

Domains

Predicted by InterproScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (93-144)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-69)

• ATPase family associated with various cellular activities (AAA) (AAA) (218-336)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (723-801)

• AAA domain (Cdc48 subfamily) (AAA_2) (545-716)

• AAA lid domain (AAA_lid_9) (358-449)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	85.662	100	0.857
clpC	Streptococcus thermophilus LMG 18311	50.297	100	0.518
clpC	Streptococcus thermophilus LMD-9	50.297	100	0.518
clpC	Streptococcus pneumoniae Rx1	49.1	100	0.501
clpC	Streptococcus pneumoniae D39	49.1	100	0.501
clpC	Streptococcus pneumoniae TIGR4	48.98	100	0.5
clpC	Streptococcus mutans UA159	48.739	100	0.498
clpC	Bacillus subtilis subsp. subtilis str. 168	49.25	98.039	0.483
clpE	Streptococcus mutans UA159	47.516	78.922	0.375
clpE	Streptococcus pneumoniae TIGR4	46.505	80.637	0.375
clpE	Streptococcus pneumoniae Rx1	46.505	80.637	0.375
clpE	Streptococcus pneumoniae D39	46.505	80.637	0.375
clpE	Streptococcus pneumoniae R6	46.505	80.637	0.375