Detailed information NTG0541205

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: JW886_RS03340
• Genome accession: NZ_CP070872
• Coordinates: 657466..659709 (+)
• Length: 747 a.a.
• NCBI ID: WP_200407734.1
• Uniprot ID: -
• Organism: Lactococcus taiwanensis strain K_LL004
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 652466..664709

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JW886_RS03330 (JW886_03330)	dnaG	653851..655734 (+)	1884	WP_205872300.1	DNA primase	-
JW886_RS03335 (JW886_03335)	rpoD	656048..657175 (+)	1128	WP_369932325.1	RNA polymerase sigma factor RpoD	-
JW886_RS03340 (JW886_03340)	clpC	657466..659709 (+)	2244	WP_200407734.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
JW886_RS03345 (JW886_03345)	-	659789..660259 (-)	471	WP_075524416.1	Rrf2 family transcriptional regulator	-
JW886_RS03350 (JW886_03350)	gap	660428..661441 (+)	1014	WP_075524417.1	type I glyceraldehyde-3-phosphate dehydrogenase	-
JW886_RS03355 (JW886_03355)	def	661592..662227 (-)	636	WP_075524418.1	peptide deformylase	-
JW886_RS03360 (JW886_03360)	-	662387..662842 (+)	456	WP_205872301.1	RNA pyrophosphohydrolase	-

Sequence

Protein

• Length: 747 a.a.
• Molecular weight: 83181.01 Da
• Isoelectric Point: 4.8126

>NTDB_id=541205 JW886_RS03340 WP_200407734.1 657466..659709(+) (clpC) [Lactococcus taiwanensis strain K_LL004]
MLCQNCNINEATIHLYTSLNGQKKQIDLCQNCYQIMKSGGQEALFGAGNASNGNTDEPFNPFNDIFSALHGQDFNGNANQ
TPPTQTGGRGPRGPQNPRAKQPKGMLEEFGINITESARRGEIDPVIGRDEEIKRVIEILNRRTKNNPVLIGEPGVGKTAV
VEGLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGIRGQFEERMQKLMDEIRKRNDVIMFIDEIHEIVGAGSAGDGNMDA
GNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPSVEETITILRGIQPRYEDYHHVKYTDEAIEAAAHL
SNRYIQDRFLPDKAIDLLDESGSKKNLTLKFVDPEDINRRIAEAEKKKNEATQAEDFEKAAHFRDQISKLRELQNHEVSD
EESPVITEKDIEQIVEQKTQIPVGDLKEKEQTQLINLADDLKAHVIGQDEAVDKIAKAIRRSRVGLGKPNRPIGSFLFVG
PTGVGKTELAKQLAMELFGSSESMIRFDMSEYMEKHSVAKLIGAPPGYVGYEEAGQLTERVRRNPYSLILLDEIEKAHPD
VMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTGKVEASVGFGAAREGRTKSVLGQLGDFFSPEFMNRFDGIIEFS
ALSKENLLKIVDLMLGDVNQQIGRNEIHLQVTQAAKEKLVDLGYDPSMGARPLRRTIQEHIEDPIADFYIEHPEYKELVA
DVIDDKIVISNQAQETTETTDEAVPAE

Nucleotide

• Length: 2244 bp

>NTDB_id=541205 JW886_RS03340 WP_200407734.1 657466..659709(+) (clpC) [Lactococcus taiwanensis strain K_LL004]
ATGCTTTGTCAAAATTGTAATATTAATGAGGCGACGATTCACCTTTATACAAGTTTGAATGGTCAGAAAAAACAAATTGA
TCTTTGTCAAAATTGCTATCAAATTATGAAATCTGGTGGGCAAGAAGCGTTGTTTGGTGCAGGAAATGCTTCAAACGGTA
ATACTGACGAACCTTTCAACCCATTTAATGATATTTTCAGCGCCTTACATGGGCAAGATTTCAATGGAAATGCCAATCAA
ACGCCACCAACACAAACAGGTGGACGTGGTCCGCGCGGTCCGCAAAATCCTCGGGCAAAACAACCTAAAGGAATGTTAGA
AGAATTTGGAATTAACATCACAGAGTCAGCTCGTCGTGGTGAAATTGACCCGGTGATTGGTCGTGATGAAGAAATCAAAC
GGGTCATTGAGATTTTAAATCGTAGGACTAAGAATAATCCTGTGTTAATTGGTGAACCTGGTGTTGGTAAAACAGCAGTT
GTTGAAGGTTTAGCGCAAAAAATTGTGGACGGAGATGTGCCACAAAAACTACAAAATAAAGAAGTGATTCGTCTTGATGT
TGTTTCTCTTGTTCAAGGAACAGGAATTCGGGGTCAATTTGAAGAACGAATGCAAAAATTAATGGATGAAATCAGAAAAC
GTAATGATGTGATTATGTTTATTGATGAAATCCATGAAATTGTTGGTGCTGGTTCTGCCGGTGATGGCAATATGGATGCG
GGAAATATCCTAAAACCTGCGCTTGCGCGTGGTGAGCTTCAATTGGTCGGAGCAACAACGCTCAATGAATATCGTATCAT
TGAAAAAGATGCTGCGCTTGAACGTCGGATGCAACCTGTCAAAGTTGATGAACCATCAGTTGAAGAAACGATTACGATTC
TTCGAGGGATTCAACCACGCTATGAAGATTATCATCACGTGAAATACACTGATGAGGCGATTGAAGCAGCCGCTCATTTG
TCAAATCGTTACATTCAAGACCGTTTCTTACCAGATAAAGCCATTGACCTTTTGGATGAGTCGGGTTCTAAGAAAAATCT
AACACTTAAATTTGTTGATCCTGAAGATATCAATCGTCGAATTGCAGAAGCAGAAAAGAAGAAAAATGAAGCGACTCAAG
CTGAAGATTTTGAAAAAGCCGCTCATTTCCGTGACCAAATCAGCAAACTTCGTGAATTGCAAAATCATGAGGTTTCAGAT
GAAGAAAGTCCAGTCATCACTGAGAAAGATATTGAGCAAATTGTGGAGCAAAAAACTCAAATTCCAGTTGGTGATTTGAA
AGAAAAAGAACAAACCCAATTGATTAATTTGGCTGATGATTTGAAAGCTCATGTGATTGGACAGGATGAAGCAGTGGATA
AGATTGCTAAAGCCATCCGTCGTTCTCGTGTGGGACTTGGTAAACCTAATCGTCCAATTGGTTCTTTCCTCTTTGTCGGA
CCTACTGGTGTTGGTAAAACTGAACTTGCTAAACAATTGGCGATGGAACTTTTTGGTTCAAGTGAAAGTATGATTCGTTT
TGACATGTCGGAATACATGGAAAAACATTCGGTGGCCAAATTGATTGGAGCCCCTCCAGGATATGTAGGTTATGAAGAAG
CGGGTCAACTGACTGAACGTGTTCGTCGTAACCCTTACAGTTTGATTTTATTAGATGAAATCGAAAAAGCACATCCAGAT
GTGATGCACATGTTCTTGCAAATTCTTGAAGATGGACGTCTGACAGACGCACAAGGACGGACCGTATCCTTTAAAGATAG
TTTGATTATTATGACTTCTAATGCCGGAACGGGTAAAGTTGAAGCCTCTGTCGGTTTTGGTGCTGCGCGTGAAGGACGAA
CTAAATCAGTGCTTGGTCAACTTGGCGATTTCTTTAGTCCTGAATTCATGAACCGTTTTGACGGAATTATTGAATTCTCT
GCATTGAGTAAAGAAAACTTACTTAAAATTGTTGATCTCATGCTGGGTGATGTCAACCAACAAATTGGACGTAATGAAAT
CCACTTGCAAGTCACTCAAGCTGCAAAAGAAAAATTAGTTGATTTAGGATATGACCCTTCAATGGGTGCGCGTCCACTGC
GTCGTACAATTCAAGAACATATTGAAGATCCAATTGCTGATTTTTATATTGAACATCCAGAATATAAAGAATTGGTCGCT
GATGTGATTGATGATAAAATCGTCATCTCCAACCAAGCGCAAGAAACGACAGAAACAACTGATGAAGCAGTCCCTGCCGA
GTAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (286-385)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (642-712)

• AAA domain (Cdc48 subfamily) (AAA_2) (471-634)

• ATPase family associated with various cellular activities (AAA) (AAA) (148-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	95.856	100	0.96
clpE	Streptococcus mutans UA159	76.618	100	0.776
clpE	Streptococcus pneumoniae Rx1	76.639	97.992	0.751
clpE	Streptococcus pneumoniae D39	76.639	97.992	0.751
clpE	Streptococcus pneumoniae R6	76.639	97.992	0.751
clpE	Streptococcus pneumoniae TIGR4	76.639	97.992	0.751
clpC	Bacillus subtilis subsp. subtilis str. 168	51.976	88.086	0.458
clpC	Streptococcus pneumoniae D39	47.106	83.266	0.392
clpC	Streptococcus pneumoniae Rx1	47.106	83.266	0.392
clpC	Streptococcus pneumoniae TIGR4	47.106	83.266	0.392
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	47.471	82.062	0.39
clpC	Streptococcus thermophilus LMD-9	44.104	87.416	0.386
clpC	Streptococcus thermophilus LMG 18311	43.951	87.416	0.384
clpC	Streptococcus mutans UA159	45.793	82.731	0.379