Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   IAK_RS0108215 Genome accession   NZ_AFXK01000001
Coordinates   1725716..1726312 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa 213BR     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1720716..1731312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAK_RS0108195 - 1721611..1721988 (+) 378 WP_003083354.1 hypothetical protein -
  IAK_RS0108200 - 1722242..1723108 (-) 867 WP_003120462.1 ABC transporter substrate-binding protein -
  IAK_RS0108205 dnaX 1723145..1725265 (+) 2121 WP_033864318.1 DNA polymerase III subunit gamma/tau -
  IAK_RS0108210 - 1725311..1725637 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  IAK_RS0108215 recR 1725716..1726312 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  IAK_RS0108220 - 1726435..1727583 (+) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  IAK_RS0108225 - 1727596..1728135 (-) 540 WP_003103931.1 CbrC family protein -
  IAK_RS0108230 - 1728209..1729096 (-) 888 WP_003103932.1 SDR family NAD(P)-dependent oxidoreductase -
  IAK_RS0108235 - 1729093..1730676 (-) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=54120 IAK_RS0108215 WP_003087237.1 1725716..1726312(+) (recR) [Pseudomonas aeruginosa 213BR]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=54120 IAK_RS0108215 WP_003087237.1 1725716..1726312(+) (recR) [Pseudomonas aeruginosa 213BR]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGTTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48

Multiple sequence alignment