Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JW886_RS00095 Genome accession   NZ_CP070872
Coordinates   17269..18630 (-) Length   453 a.a.
NCBI ID   WP_205271950.1    Uniprot ID   -
Organism   Lactococcus taiwanensis strain K_LL004     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 12269..23630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW886_RS00065 (JW886_00065) - 13587..14081 (+) 495 WP_075525637.1 GNAT family N-acetyltransferase -
  JW886_RS00070 (JW886_00070) - 14173..14469 (-) 297 WP_241003772.1 DUF1048 domain-containing protein -
  JW886_RS00075 (JW886_00075) - 14484..14831 (-) 348 WP_205872012.1 DUF1048 domain-containing protein -
  JW886_RS00080 (JW886_00080) - 14818..15180 (-) 363 WP_205872013.1 PadR family transcriptional regulator -
  JW886_RS00085 (JW886_00085) - 15301..15930 (-) 630 WP_205872014.1 pyridoxamine 5'-phosphate oxidase family protein -
  JW886_RS00090 (JW886_00090) - 15995..17074 (-) 1080 WP_200407563.1 PIN/TRAM domain-containing protein -
  JW886_RS00095 (JW886_00095) radA 17269..18630 (-) 1362 WP_205271950.1 DNA repair protein RadA Machinery gene
  JW886_RS00100 (JW886_00100) - 18914..19141 (-) 228 WP_200407565.1 heavy-metal-associated domain-containing protein -
  JW886_RS00105 (JW886_00105) - 19290..19535 (-) 246 WP_075525629.1 hypothetical protein -
  JW886_RS00110 (JW886_00110) - 19659..21527 (-) 1869 WP_205872015.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49788.18 Da        Isoelectric Point: 5.2941

>NTDB_id=541181 JW886_RS00095 WP_205271950.1 17269..18630(-) (radA) [Lactococcus taiwanensis strain K_LL004]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMSGERSKPMKLDEVELFETPRVETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVMYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSITGIAIPTSIEVIGVATLNECLKMVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=541181 JW886_RS00095 WP_205271950.1 17269..18630(-) (radA) [Lactococcus taiwanensis strain K_LL004]
ATGGCAAAGAAAAAATCATCCTTTGTTTGTCAAAATTGTGGCTATAAATCTGCTAAATATCTCGGGCGTTGTCCGAATTG
TGGAGAATGGTCCTCTTTTGTTGAAGAGGTCGAAGTTCAAGAGGTCAAGAATCAGCGGGTTTCAATGAGTGGTGAGCGTT
CAAAACCAATGAAACTAGATGAAGTAGAGCTCTTTGAAACGCCCCGAGTTGAGACCGATCTAGATGAGTTCAATCGAGTC
TTGGGAGGAGGGGTCGTTCCTGGCTCACTCGTCCTAATTGGTGGAGATCCGGGGATTGGGAAATCTACACTACTCTTACA
AGTTTCAACCCAACTTGCTTCTCGTGGTAGAGTAATGTATGTCAGTGGGGAAGAGTCTGCGCAACAAATCAAATTACGCG
CTGAACGTTTAGGAGATATTGACCGAGACTTTTATCTGTATGCCGAAACTAATATGCAATCCATAAGAGCAGAAGTCGAG
CGACTAAAACCCAACTTTTTGATTATTGATTCTATACAAACAATCATGACCCCAGAAATTCAATCTACCCAAGGCTCAGT
AAGTCAAGTGCGTGAAGTGACTGGTGAACTGATGCAAATTGCTAAAACTAACGATATTGCTACATTCATTGTTGGACATG
TGACTAAAGAAGGCCAACTTGCTGGGCCACGGATGTTAGAACATATGGTGGATACGGTCCTCTATTTCGAAGGAGAACGC
AACAACACCTTTCGTATTCTGAGAGCTGTAAAGAATCGTTTTGGTTCTACGAATGAGATTGGTATTTTTGAAATGCAGGG
TCACGGTTTAGTTGAGGTGACGAATCCTTCTGAAGTTTTCCTAGAAGAACGACTCGAAGGCTCGACAGGTTCTGCTATTG
TCTGTGCTCTAGAAGGGACACGTCCAATTTTAGTAGAAATACAGGCGTTAACCACCCCCACTATGTTTGGCAATGCAAAA
CGAACCACCTCAGGACTTGATTTTAATCGAGTTAGTTTGATTATGGCCGTGCTTGAGAAGCGAACAGGATTACTTTTACA
AAATCAGGATGCTTATCTCAAGTCAGCAGGGGGAGTTAAACTAGATGAGCCTGCAATTGACTTGGCAGTTGCCGTCGCAG
TTGCGTCAAGCTACAAAGAATTACCTACGGATGCACGTGAGTGCTTTATTGGAGAGATTGGCCTCACAGGAGAAATCCGA
CGCGTTACACGTATTGAGCAACGACTAAATGAAGCAGCCAAGCTAGGTTTTAAGAAGGTATATGCCCCTAAGAATTCCAT
TACAGGGATAGCTATTCCGACTTCCATTGAAGTAATTGGAGTAGCTACTCTCAACGAGTGTTTAAAAATGGTGTTTGGGT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.015

100

0.81
  radA Streptococcus pneumoniae D39

81.015

100

0.81
  radA Streptococcus pneumoniae R6

81.015

100

0.81
  radA Streptococcus pneumoniae TIGR4

81.015

100

0.81
  radA Streptococcus mitis SK321

81.015

100

0.81
  radA Streptococcus mitis NCTC 12261

80.795

100

0.808
  radA Bacillus subtilis subsp. subtilis str. 168

62.582

100

0.631