Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   JW980_RS15945 Genome accession   NZ_CP070866
Coordinates   3236874..3238028 (+) Length   384 a.a.
NCBI ID   WP_205667333.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3231874..3243028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS15930 (JW980_15930) - 3233598..3235619 (-) 2022 WP_205667331.1 TonB-dependent copper receptor -
  JW980_RS15935 (JW980_15935) - 3235692..3236129 (-) 438 WP_078389804.1 DUF2946 family protein -
  JW980_RS15940 (JW980_15940) def 3236220..3236753 (-) 534 WP_205667332.1 peptide deformylase -
  JW980_RS15945 (JW980_15945) tsaP 3236874..3238028 (+) 1155 WP_205667333.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  JW980_RS15950 (JW980_15950) dprA 3238051..3239184 (+) 1134 WP_205667334.1 DNA-processing protein DprA Machinery gene
  JW980_RS15955 (JW980_15955) - 3239230..3239799 (+) 570 WP_205667335.1 L-threonylcarbamoyladenylate synthase -
  JW980_RS15960 (JW980_15960) - 3240199..3241119 (-) 921 WP_205667336.1 DMT family transporter -
  JW980_RS15965 (JW980_15965) - 3241454..3242008 (+) 555 WP_205667337.1 hypothetical protein -
  JW980_RS15970 (JW980_15970) - 3242132..3242677 (+) 546 WP_058868685.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42241.21 Da        Isoelectric Point: 8.5500

>NTDB_id=541170 JW980_RS15945 WP_205667333.1 3236874..3238028(+) (tsaP) [Acinetobacter johnsonii strain XY27]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVTSTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKISPSVVDK

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=541170 JW980_RS15945 WP_205667333.1 3236874..3238028(+) (tsaP) [Acinetobacter johnsonii strain XY27]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCTGGCGTCACTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCTCCTGCTTTAAAAGCCAATG
CACCAAATGTTTACGTGGTGAAAAAAGGCGATACCCTTTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCAGGTGACCGTTTATTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTTGGCGCTGCCGATCAGCGTGTCATTGCAGG
TAAAGGGCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGATGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCAAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGTAATATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAAATTTCTCCCTCTGTAGTGGATAAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.974

100

0.661