Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   JW980_RS15555 Genome accession   NZ_CP070866
Coordinates   3150366..3150689 (-) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain XY27     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3145366..3155689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS15535 (JW980_15535) - 3145407..3146150 (-) 744 WP_205667299.1 FHA domain-containing protein -
  JW980_RS15540 (JW980_15540) gspD 3146237..3148594 (-) 2358 WP_114392533.1 type II secretion system secretin GspD -
  JW980_RS15545 (JW980_15545) - 3148634..3149458 (-) 825 WP_205667300.1 type II secretion system protein N -
  JW980_RS15550 (JW980_15550) gspN 3149458..3150168 (-) 711 WP_205668158.1 type II secretion system protein N -
  JW980_RS15555 (JW980_15555) hns 3150366..3150689 (-) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  JW980_RS15560 (JW980_15560) - 3150841..3151269 (-) 429 WP_205667301.1 acyl-CoA thioesterase -
  JW980_RS15565 (JW980_15565) - 3151277..3152470 (-) 1194 WP_205667302.1 heme biosynthesis protein HemY -
  JW980_RS15570 (JW980_15570) - 3152475..3153317 (-) 843 WP_205667303.1 hypothetical protein -
  JW980_RS15575 (JW980_15575) - 3153314..3154093 (-) 780 WP_078425923.1 uroporphyrinogen-III synthase -
  JW980_RS15580 (JW980_15580) hemC 3154106..3155026 (-) 921 WP_078425924.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=541165 JW980_RS15555 WP_004692786.1 3150366..3150689(-) (hns) [Acinetobacter johnsonii strain XY27]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=541165 JW980_RS15555 WP_004692786.1 3150366..3150689(-) (hns) [Acinetobacter johnsonii strain XY27]
ATGCCAGATATTAGTAATTTGTCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAACAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTCTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86