Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   JW980_RS15020 Genome accession   NZ_CP070866
Coordinates   3032455..3034677 (+) Length   740 a.a.
NCBI ID   WP_205667258.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3027455..3039677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS14995 (JW980_14995) lnt 3027881..3029440 (+) 1560 WP_205667255.1 apolipoprotein N-acyltransferase -
  JW980_RS15000 (JW980_15000) - 3029507..3029845 (-) 339 WP_205667256.1 tRNA-binding protein -
  JW980_RS15005 (JW980_15005) - 3030007..3030342 (-) 336 WP_058868822.1 hypothetical protein -
  JW980_RS15010 (JW980_15010) gspG 3030626..3031063 (-) 438 WP_058868821.1 type II secretion system major pseudopilin GspG -
  JW980_RS15015 (JW980_15015) gspF 3031097..3032302 (-) 1206 WP_205667257.1 type II secretion system inner membrane protein GspF -
  JW980_RS15020 (JW980_15020) priA 3032455..3034677 (+) 2223 WP_205667258.1 primosomal protein N' Machinery gene
  JW980_RS15025 (JW980_15025) - 3034759..3036600 (+) 1842 WP_205667259.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  JW980_RS15030 (JW980_15030) - 3036651..3037526 (+) 876 WP_004978815.1 Hsp33 family molecular chaperone HslO -
  JW980_RS15035 (JW980_15035) - 3037726..3038178 (+) 453 WP_205667260.1 DUF2147 domain-containing protein -
  JW980_RS15040 (JW980_15040) - 3038322..3039275 (+) 954 WP_205668155.1 DnaJ C-terminal domain-containing protein -
  JW980_RS15045 (JW980_15045) - 3039286..3039642 (+) 357 WP_004978810.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84161.02 Da        Isoelectric Point: 8.8808

>NTDB_id=541161 JW980_RS15020 WP_205667258.1 3032455..3034677(+) (priA) [Acinetobacter johnsonii strain XY27]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDNAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGRASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=541161 JW980_RS15020 WP_205667258.1 3032455..3034677(+) (priA) [Acinetobacter johnsonii strain XY27]
ATGCCAGAAAATACACTTTCCACAACACCAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAGCTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAACGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCATGCTGCTTTGCCCAGCTTTTTACGCCAAGGCAAACCTTATAATTTACTGGCGCGGATGTGGAAGCTGATAG
ATGATCATGCCGAAGACAAATTAAAACGTTCAGAAAAACAACAAGATGCCTATAAAATTCTAAAGCTGCATCCCACCGGA
ACGTCTGAAAACATTTTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAGGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCTCAAGACTTTAAACCGCAAGCCATGACACTGGCGCAAATGCCTCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAAGCTCGTCATAGCTACCATGCTTTCTTACTGGATGGTTTAACCGGTAGTGGCAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGTAAACAAGTCTTGGTATTAGTGCCTGAAATTGGTCTCAC
CCCACAAACAGTGAGCCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCCTGGCAAAGCGCACAAACGGGCAGAGCTTCGATTGTGATTGGCACACGTTCTGCCATCTATACCCCCCTT
CCGCATTTGGGTTTGATTGTCTTAGATGAAGAGCATGACTTATCTTTCAAGCAACAAGAAGGCTTCCGCTACCATGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCTGCAACGCCAAGTATCGACAGTTATG
CATTGGTCGAACAAGGTAAAATGACTCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCAGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCACAAAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCCAAGT
GCCCCCACTGCGATGCCAATTTTACCGTGCATCGACAGCCCTATCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACATTGTCCGCAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCCAACTTTGACGTAATTCGGGTTGATCGTGACTCGACCAGTCGGGTCGGCAGCTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTAGTGGCGATTTTAGACATCGACTCGGGCTTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAGCT
CATCATCCAAGTCGCTGGACGTGCTGGGCGTGGCGAGAAAAAAGGCGAAGTCTATTTACAAACTCTACGTCCAGACCATC
CTTTGCTGAATACCCTGCTGGAATCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGATCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGC
ACAAGCATTGCGCCAAGCCTCCGAAAACAGTATTGATATTTGGGGACCGATTCCTGCGCCGATGGAGCGTAAAGCGGGCC
GCTATCAAGCGCATATGGTACTCCTGTCCAAAGACCGTGCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCATAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGCTAAGTTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

DEAD/DEAH box helicase (DEAD)

(210-371)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.819

98.784

0.709