Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   JW980_RS09980 Genome accession   NZ_CP070866
Coordinates   1987207..1987653 (-) Length   148 a.a.
NCBI ID   WP_205666739.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain XY27     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1982207..1992653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS09950 (JW980_09950) tadA 1982463..1982963 (-) 501 WP_004984825.1 tRNA adenosine(34) deaminase TadA -
  JW980_RS09955 (JW980_09955) - 1982969..1984090 (-) 1122 WP_205666736.1 enoyl-CoA hydratase/isomerase family protein -
  JW980_RS09960 (JW980_09960) ung 1984087..1984800 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  JW980_RS09965 (JW980_09965) - 1984842..1985438 (-) 597 WP_205666737.1 6-pyruvoyl trahydropterin synthase family protein -
  JW980_RS09970 (JW980_09970) gspK 1985561..1986511 (-) 951 WP_062032984.1 type II secretion system minor pseudopilin GspK -
  JW980_RS09975 (JW980_09975) xcpW 1986590..1987210 (-) 621 WP_205666738.1 type II secretion system minor pseudopilin GspJ Machinery gene
  JW980_RS09980 (JW980_09980) xcpV 1987207..1987653 (-) 447 WP_205666739.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  JW980_RS09985 (JW980_09985) - 1987643..1988212 (-) 570 WP_205666740.1 type II secretion system protein -
  JW980_RS09990 (JW980_09990) - 1988225..1988839 (-) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  JW980_RS09995 (JW980_09995) - 1988885..1989658 (-) 774 WP_205666741.1 TatD family hydrolase -
  JW980_RS10000 (JW980_10000) - 1989685..1990026 (-) 342 WP_058869739.1 PilZ domain-containing protein -
  JW980_RS10005 (JW980_10005) - 1990041..1991024 (-) 984 WP_205666742.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  JW980_RS10010 (JW980_10010) kdsB 1991044..1991805 (-) 762 WP_205666743.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16272.72 Da        Isoelectric Point: 9.5613

>NTDB_id=541150 JW980_RS09980 WP_205666739.1 1987207..1987653(-) (xcpV) [Acinetobacter johnsonii strain XY27]
MRAKDLKKSLPACAWVKYYFINPCSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEIN
RDWLQGTASKQITQQGETWQIDKSAQATISANVQRVNVQVSVVNTETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 447 bp        

>NTDB_id=541150 JW980_RS09980 WP_205666739.1 1987207..1987653(-) (xcpV) [Acinetobacter johnsonii strain XY27]
ATGCGAGCTAAAGATTTAAAGAAGAGTCTGCCGGCTTGCGCTTGGGTGAAATATTATTTCATTAATCCTTGCTCAGGATT
TACATTGCTGGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGCAGCGGTCGCTTTAACCAAAGTGGGTATGCAATATA
CTCAGTCTACAGCCCATGCCATCTTGCGTACCAAGGCACAATTTGTTGCCTTGAATGAAATTTCGATGATGGAAATCAAT
CGTGATTGGCTACAAGGCACGGCCTCTAAACAAATCACCCAACAAGGTGAAACTTGGCAAATTGATAAATCAGCGCAAGC
AACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCGTGGTGAATACTGAAACTGGAAAAGTAGATTCGGGTG
TTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(23-46)

Type II secretion system (T2SS), protein I (T2SSI)

(63-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

74.359

79.054

0.588