Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   JW980_RS02415 Genome accession   NZ_CP070866
Coordinates   479719..480576 (+) Length   285 a.a.
NCBI ID   WP_010327571.1    Uniprot ID   A0AA42M8G5
Organism   Acinetobacter johnsonii strain XY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474719..485576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JW980_RS02390 (JW980_02390) - 475346..475720 (-) 375 WP_029575121.1 hypothetical protein -
  JW980_RS02395 (JW980_02395) - 475932..476795 (-) 864 WP_410169848.1 diguanylate cyclase -
  JW980_RS02400 (JW980_02400) - 477249..477824 (-) 576 WP_039890521.1 xanthine phosphoribosyltransferase -
  JW980_RS02405 (JW980_02405) - 477915..478625 (-) 711 WP_005401254.1 DUF3108 domain-containing protein -
  JW980_RS02410 (JW980_02410) - 478781..479458 (-) 678 WP_004977854.1 hypothetical protein -
  JW980_RS02415 (JW980_02415) tonB2 479719..480576 (+) 858 WP_010327571.1 energy transducer TonB Machinery gene
  JW980_RS02420 (JW980_02420) - 480622..481032 (-) 411 WP_205667580.1 hypothetical protein -
  JW980_RS02425 (JW980_02425) ybeY 481133..481612 (-) 480 WP_183175858.1 rRNA maturation RNase YbeY -
  JW980_RS02430 (JW980_02430) - 481670..482746 (-) 1077 WP_205667581.1 PhoH family protein -
  JW980_RS02435 (JW980_02435) miaB 482785..484242 (-) 1458 WP_151836984.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32557.05 Da        Isoelectric Point: 6.0664

>NTDB_id=541141 JW980_RS02415 WP_010327571.1 479719..480576(+) (tonB2) [Acinetobacter johnsonii strain XY27]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDAAVKEIAVTLRPSDKKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEEQPETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDTKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=541141 JW980_RS02415 WP_010327571.1 479719..480576(+) (tonB2) [Acinetobacter johnsonii strain XY27]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTCGTGCTGGCGGTATTTTTGCATCTCGTAAT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTGACTTTGCGTCCTTCAGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAGGGTTCAGGGACTTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAAGAGCAGCCTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTGATGACGACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAGATGAACAGCCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTGCAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATGTTTCGGCAGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAGTTTTATGGCAACCGTTACTACCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGTATCCGTGCCATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTGCGTAAGGCTGCACCATTCGGTGGATTTGATACCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.929

98.246

0.726