Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LL142_RS03035 Genome accession   NZ_CP086168
Coordinates   587734..588117 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CMP10190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 582734..593117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL142_RS03015 (LL142_03015) - 582813..584747 (-) 1935 WP_070309968.1 RNB domain-containing ribonuclease -
  LL142_RS03020 (LL142_03020) ilvC 584866..585888 (+) 1023 WP_032589477.1 ketol-acid reductoisomerase -
  LL142_RS03025 (LL142_03025) - 585892..586974 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  LL142_RS03030 (LL142_03030) dprA 586964..587737 (+) 774 WP_060816330.1 DNA-processing protein DprA Machinery gene
  LL142_RS03035 (LL142_03035) dprB 587734..588117 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  LL142_RS03040 (LL142_03040) - 588146..588985 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  LL142_RS03045 (LL142_03045) msrA 589161..589658 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LL142_RS03050 (LL142_03050) ppa 589699..590217 (-) 519 WP_002855031.1 inorganic diphosphatase -
  LL142_RS03055 (LL142_03055) adk 590227..590805 (-) 579 WP_002855137.1 adenylate kinase -
  LL142_RS03060 (LL142_03060) aspS 590802..592553 (-) 1752 WP_227930800.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=541123 LL142_RS03035 WP_002856861.1 587734..588117(+) (dprB) [Campylobacter jejuni strain CMP10190]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=541123 LL142_RS03035 WP_002856861.1 587734..588117(+) (dprB) [Campylobacter jejuni strain CMP10190]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449