Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   IAK_RS0100135 Genome accession   NZ_AFXK01000001
Coordinates   28737..29762 (+) Length   341 a.a.
NCBI ID   WP_019725668.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa 213BR     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 23737..34762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAK_RS0100110 - 23925..24242 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  IAK_RS0100115 trkA 24391..25764 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  IAK_RS0100120 rsmB 25792..27096 (-) 1305 WP_016561456.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  IAK_RS0100125 fmt 27093..28037 (-) 945 WP_019725667.1 methionyl-tRNA formyltransferase -
  IAK_RS0100130 def 28092..28598 (-) 507 WP_003107059.1 peptide deformylase -
  IAK_RS0100135 tsaP 28737..29762 (+) 1026 WP_019725668.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IAK_RS0100140 dprA 29897..30985 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  IAK_RS0100145 - 31026..31583 (+) 558 WP_016561457.1 Sua5/YciO/YrdC/YwlC family protein -
  IAK_RS0100150 - 31593..32570 (-) 978 WP_016561458.1 NADPH:quinone reductase -
  IAK_RS0100155 hemF 32761..33678 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  IAK_RS0100160 aroE 33736..34560 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37555.98 Da        Isoelectric Point: 9.3358

>NTDB_id=54098 IAK_RS0100135 WP_019725668.1 28737..29762(+) (tsaP) [Pseudomonas aeruginosa 213BR]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDALSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=54098 IAK_RS0100135 WP_019725668.1 28737..29762(+) (tsaP) [Pseudomonas aeruginosa 213BR]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACGCCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393

Multiple sequence alignment