Detailed information NTG0540913

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: LL140_RS05795
• Genome accession: NZ_CP086163
• Coordinates: 1137998..1139338 (-)
• Length: 446 a.a.
• NCBI ID: WP_002854001.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain OBT12393
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1132998..1144338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL140_RS05770 (LL140_05770)	-	1133135..1133905 (+)	771	WP_002854059.1	MetQ/NlpA family ABC transporter substrate-binding protein	-
LL140_RS05775 (LL140_05775)	metE	1133917..1136181 (+)	2265	WP_002853777.1	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	-
LL140_RS05780 (LL140_05780)	metF	1136191..1137039 (+)	849	WP_002853590.1	methylenetetrahydrofolate reductase [NAD(P)H]	-
LL140_RS05785 (LL140_05785)	-	1137061..1137252 (-)	192	WP_002852856.1	membrane protein	-
LL140_RS05790 (LL140_05790)	atpB	1137249..1137929 (-)	681	WP_002853903.1	F0F1 ATP synthase subunit A	-
LL140_RS05795 (LL140_05795)	radA	1137998..1139338 (-)	1341	WP_002854001.1	DNA repair protein RadA	Machinery gene
LL140_RS05800 (LL140_05800)	pilA	1139338..1140204 (-)	867	WP_002853827.1	signal recognition particle-docking protein FtsY	Machinery gene
LL140_RS05805 (LL140_05805)	-	1140204..1140761 (-)	558	WP_002853633.1	TlpA family protein disulfide reductase	-
LL140_RS05810 (LL140_05810)	-	1140844..1141470 (+)	627	WP_002860439.1	5-formyltetrahydrofolate cyclo-ligase	-
LL140_RS05815 (LL140_05815)	rny	1141391..1142944 (+)	1554	WP_002853829.1	ribonuclease Y	-
LL140_RS05820 (LL140_05820)	-	1142953..1143510 (+)	558	WP_002853883.1	DedA family protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49038.94 Da
• Isoelectric Point: 6.9288

>NTDB_id=540913 LL140_RS05795 WP_002854001.1 1137998..1139338(-) (radA) [Campylobacter jejuni strain OBT12393]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide

• Length: 1341 bp

>NTDB_id=540913 LL140_RS05795 WP_002854001.1 1137998..1139338(-) (radA) [Campylobacter jejuni strain OBT12393]
ATGGCAAAGAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGTACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACGCTTTTATT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGCCTTGAGGCTAATACCCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCATTGATTCTATACAAACTCTATATTCAAATAAAATTACTTCAGCAGCAGG
AAGCATCACTCAAGTGCGTGAGATTACTTTTGAGCTTATGCGTGTGAGTAAGGCTTATAATATCAGTACTTTTATCATAG
GGCACATTACTAAAGAAGGTGCTATAGCAGGACCTAGAGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAGGGA
GATGCCACTAAAGAAATTAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGTGAAAGTTCTTACCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCGGCGGATTTGGCTGTAGTTGCAGCTATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGACTTAAGTGTTTTGTTGCTAAAGAACTTTCACAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (347-423)

• AAA domain (AAA_25) (71-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	46.085	100	0.462
radA	Streptococcus pneumoniae Rx1	46.085	100	0.462
radA	Streptococcus pneumoniae D39	46.085	100	0.462
radA	Streptococcus pneumoniae TIGR4	46.085	100	0.462
radA	Streptococcus mitis SK321	46.067	99.776	0.46
radA	Streptococcus mitis NCTC 12261	46.067	99.776	0.46
radA/sms	Bacillus subtilis subsp. subtilis str. 168	46.667	97.534	0.455