Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JR347_RS03275 Genome accession   NZ_CP070608
Coordinates   679788..681152 (+) Length   454 a.a.
NCBI ID   WP_205722625.1    Uniprot ID   A0A974WJ66
Organism   Fulvivirga lutea strain S481     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 674788..686152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR347_RS03260 (JR347_03260) - 676690..677604 (+) 915 WP_205722622.1 universal stress protein -
  JR347_RS03265 (JR347_03265) - 677601..678170 (-) 570 WP_205722623.1 hypothetical protein -
  JR347_RS03270 (JR347_03270) gpmI 678167..679690 (-) 1524 WP_205722624.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  JR347_RS03275 (JR347_03275) radA 679788..681152 (+) 1365 WP_205722625.1 DNA repair protein RadA Machinery gene
  JR347_RS03280 (JR347_03280) - 681158..681763 (+) 606 WP_205722626.1 DUF2179 domain-containing protein -
  JR347_RS03285 (JR347_03285) - 681740..682651 (-) 912 WP_205722627.1 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase -
  JR347_RS03290 (JR347_03290) - 682653..683945 (-) 1293 WP_205722628.1 amidohydrolase -
  JR347_RS03295 (JR347_03295) - 684005..684892 (+) 888 WP_205722629.1 sterol desaturase family protein -
  JR347_RS03300 (JR347_03300) - 684889..685209 (+) 321 WP_205722630.1 Rieske 2Fe-2S domain-containing protein -
  JR347_RS03305 (JR347_03305) - 685211..685636 (+) 426 WP_205722631.1 VOC family protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49644.06 Da        Isoelectric Point: 6.5012

>NTDB_id=540905 JR347_RS03275 WP_205722625.1 679788..681152(+) (radA) [Fulvivirga lutea strain S481]
MAKTKTIFFCQNCGYESAKWLGKCPSCNEWNTFVEELQQKATKNDWSPSEKKSSPKPKALKEITAENSARINTTDSELNR
VLGGGVVPGSVILIAGEPGIGKSTLMLQIGLSINAKVLYVSGEESEQQIKMRADRMTEKIKVNCFILAETSTQNIFKQAE
EFAPELMIIDSIQTLHSNQVESAAGSVSQVRQATGELIRFAKETATPLFLVGHITKDGAIAGPKVLEHMVDTVLQFEGDR
HLTYRILRTTKNRFGSTSELGIYEMMGNGLREVSNPSEILISQKEGDISGVTIGATIEGNRPLMIEIQSLVSTAAYGTPQ
RSSTGFDAKRLNMLLAVLEKRCGFRLGLQDVFLNMAGGIKVEDPAIDLAVCCSIISSLEEISISDKSCFAAEVGLGGELR
AVNRLENRIGEAEKLGFETIYISKYGLKGIDTKKFKIRIVSCSKINDVFSELFG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=540905 JR347_RS03275 WP_205722625.1 679788..681152(+) (radA) [Fulvivirga lutea strain S481]
TTGGCTAAAACAAAAACTATATTTTTCTGTCAGAATTGTGGATATGAATCTGCGAAATGGTTGGGCAAATGCCCATCATG
CAATGAGTGGAACACTTTTGTAGAAGAACTTCAGCAAAAAGCTACGAAAAATGACTGGAGCCCTTCTGAGAAGAAAAGCA
GCCCTAAGCCAAAGGCGCTCAAAGAAATTACAGCAGAAAATAGTGCCCGAATTAACACTACGGACAGCGAGCTTAATCGC
GTTTTAGGCGGTGGTGTGGTACCCGGATCAGTTATTCTTATTGCAGGGGAGCCTGGAATTGGAAAGTCTACTTTAATGCT
TCAAATAGGTCTTTCGATAAACGCCAAAGTACTTTATGTATCGGGGGAAGAAAGTGAGCAGCAGATAAAAATGCGAGCTG
ACCGGATGACTGAAAAAATAAAAGTGAACTGCTTTATCCTGGCAGAAACCAGTACTCAAAATATTTTCAAACAAGCCGAA
GAGTTCGCTCCCGAGTTGATGATCATCGACTCTATTCAAACATTGCATTCCAATCAGGTAGAATCGGCAGCGGGTAGTGT
ATCGCAAGTGAGGCAAGCTACCGGAGAGTTAATTCGTTTTGCCAAAGAAACCGCCACACCGCTATTTCTGGTTGGCCATA
TTACTAAAGATGGAGCCATAGCAGGCCCAAAAGTACTAGAGCATATGGTTGACACCGTTTTACAATTTGAAGGCGATAGG
CATCTTACTTATCGTATTTTAAGAACAACAAAGAATCGTTTTGGCTCAACTTCTGAGTTAGGCATTTATGAGATGATGGG
TAATGGGCTTCGTGAAGTAAGCAATCCATCAGAAATTTTGATATCACAGAAAGAAGGTGATATTAGTGGCGTAACTATTG
GTGCAACCATTGAAGGAAATAGGCCTTTAATGATTGAAATACAATCTTTAGTAAGCACTGCGGCCTATGGCACTCCGCAA
AGAAGTTCTACTGGCTTTGATGCGAAACGGTTAAATATGCTATTGGCAGTATTGGAAAAACGATGCGGTTTTAGGCTAGG
CTTACAAGATGTGTTTCTTAACATGGCTGGTGGTATTAAAGTAGAAGATCCGGCTATCGATTTGGCGGTTTGTTGTTCTA
TTATTTCTTCATTGGAAGAAATCTCCATTTCAGATAAATCTTGCTTTGCTGCTGAAGTAGGATTAGGAGGCGAGCTTAGA
GCGGTAAATCGACTAGAAAATAGAATTGGAGAAGCAGAAAAGTTGGGGTTTGAAACTATCTATATTTCGAAATATGGATT
AAAAGGAATTGATACAAAGAAGTTTAAAATTCGAATTGTATCTTGTTCTAAAATAAATGATGTGTTTAGCGAACTGTTTG
GTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-218)

Subunit ChlI of Mg-chelatase (ChlI)

(340-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.67

100

0.498
  radA Streptococcus mitis NCTC 12261

49.67

100

0.498
  radA Streptococcus pneumoniae Rx1

49.67

100

0.498
  radA Streptococcus pneumoniae D39

49.67

100

0.498
  radA Streptococcus pneumoniae R6

49.67

100

0.498
  radA Streptococcus pneumoniae TIGR4

49.67

100

0.498
  radA Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.487