Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LL140_RS03050 Genome accession   NZ_CP086163
Coordinates   589953..590336 (+) Length   127 a.a.
NCBI ID   WP_002854812.1    Uniprot ID   -
Organism   Campylobacter jejuni strain OBT12393     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 584953..595336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL140_RS03030 (LL140_03030) - 585032..586966 (-) 1935 WP_002854954.1 RNB domain-containing ribonuclease -
  LL140_RS03035 (LL140_03035) ilvC 587085..588107 (+) 1023 WP_180819996.1 ketol-acid reductoisomerase -
  LL140_RS03040 (LL140_03040) - 588111..589193 (+) 1083 WP_002854844.1 divergent polysaccharide deacetylase family protein -
  LL140_RS03045 (LL140_03045) dprA 589183..589956 (+) 774 WP_002855109.1 DNA-processing protein DprA Machinery gene
  LL140_RS03050 (LL140_03050) dprB 589953..590336 (+) 384 WP_002854812.1 Holliday junction resolvase RuvX Machinery gene
  LL140_RS03055 (LL140_03055) - 590365..591204 (+) 840 WP_011812724.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  LL140_RS03060 (LL140_03060) msrA 591380..591877 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  LL140_RS03065 (LL140_03065) ppa 591918..592436 (-) 519 WP_002855031.1 inorganic diphosphatase -
  LL140_RS03070 (LL140_03070) adk 592446..593024 (-) 579 WP_002855137.1 adenylate kinase -
  LL140_RS03075 (LL140_03075) aspS 593021..594772 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14159.67 Da        Isoelectric Point: 8.4950

>NTDB_id=540898 LL140_RS03050 WP_002854812.1 589953..590336(+) (dprB) [Campylobacter jejuni strain OBT12393]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIADTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=540898 LL140_RS03050 WP_002854812.1 589953..590336(+) (dprB) [Campylobacter jejuni strain OBT12393]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCGATACGCGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441